Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00020 ATGGGAATGGGTGCGGCTCATCAAGAAAACTACTACAAACGGCGTGCTGCGTCTTCACATCTTCATGCCTTGGAGATGGATGTGAATAAGAGACCATTGAGAAATTACGCCGAGACAGTTCAGAAAGAGGTGACAAACCAGATGCGTGAGATTCTTGTTGATTGGTTAGTGGAGGTTACAGAGGAATTCAAGCTTGTTTCTGATACCCTATACCTCGCTGTTTCTTGCGTTGATCGCTTCCTCTCTGTTTGTCCTCTCAACATGAAACACCTTCAGCTTCTCGGCGTTTCATCCATCCTCATTGCCTCGAAACAAGGAGATATAAGCCCTCCACATGCACAACAATTGTGCTTTATGACAGATAATACTTACACCATCTCAGAGGTTATACAGATGGAGAAGGACATCTATGCATCTTTGAACTCTGACTTGGGCTATCCCACCTCTAAAACTTTTCTCAGAATTTTTATGGGAGCTGATCAGACAGATTTTCAGCATTCTAGCCAGCAATTGGAATTCTTGGCTTGTTATCTTTTGGAGCTCTGCCTATTATGCTCTAAGTGCGTCAAGTTCTTACCCTCCATAGCGGCCGCATCTGCTTTATTTCTATCGAGGTTTATAATTCAACCAAACCACCACCCTTGGAATCCAATGTTACAATGTCAAACAGGATATAAGCCACCTGAGCTACAAGAATGTGTCTTTGCCATACATGATGTGCACTCCACTATCACAGTGTGCCCTTTACAAGCAGTGCGGGAAAAGTACTTGCAACCCAAGTTTACATGTGTGGCATCTTTGACTGCTGGGGAAATTCCTGCAAGTTATTTTGAGCCCATTGATTAA 846 0.4338 MGMGAAHQENYYKRRAASSHLHALEMDVNKRPLRNYAETVQKEVTNQMREILVDWLVEVTEEFKLVSDTLYLAVSCVDRFLSVCPLNMKHLQLLGVSSILIASKQGDISPPHAQQLCFMTDNTYTISEVIQMEKDIYASLNSDLGYPTSKTFLRIFMGADQTDFQHSSQQLEFLACYLLELCLLCSKCVKFLPSIAAASALFLSRFIIQPNHHPWNPMLQCQTGYKPPELQECVFAIHDVHSTITVCPLQAVREKYLQPKFTCVASLTAGEIPASYFEPID 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00020 281 FunFam Cyclin A1 135 266 - -
Trre10g00020 281 Pfam Cyclin, C-terminal domain 147 268 IPR004367 -
Trre10g00020 281 PIRSF Cyclin_A_B_D_E 19 275 IPR046965 GO:0016538|GO:0044772
Trre10g00020 281 Gene3D - 25 266 - -
Trre10g00020 281 Pfam Cyclin, N-terminal domain 25 144 IPR006671 -
Trre10g00020 281 SUPERFAMILY Cyclin-like 146 268 IPR036915 -
Trre10g00020 281 SMART Cyclin_C_2 147 275 IPR004367 -
Trre10g00020 281 SUPERFAMILY Cyclin-like 20 144 IPR036915 -
Trre10g00020 281 Gene3D - 32 145 - -
Trre10g00020 281 PANTHER CYCLINS 12 257 IPR039361 -
Trre10g00020 281 SMART cyclin_7 151 239 IPR013763 -
Trre10g00020 281 SMART cyclin_7 54 138 IPR013763 -
Trre10g00020 281 ProSitePatterns Cyclins signature. 49 80 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00020 Trre-Chr10 206914 208646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00020 25 281 Core Cell Cycle Gene Families AT5G43080 53.101 2.80e-93 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00020 K06627 - sind:105155568 282.722