Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00014 ATGATTAAATATCCATTTTGGTCAGACATGGAGAATGACAAACCTGGGGAGAAAATAAGTTACATTGGCAATAGGATGCATGAAGATGAATGCATCCATGAACCTTGTTACTGCCCCCTTTCAGATTGTGATTTTGTTGCATCATCAGAAATATTATCCAACCATTTCAGTGAGAAACACAGGGATTCTCAAATCAAATTATCTTATGATCACTTATTTTTTGTCTCCTTGAAGTCCAATGATGAAACCATTGTTCTTCAAGAGGAAAATGATGGCAAGCTTTTTATTCTCAATAATAGTACCGTGATTTTGAGAAAAGCTGTCAATATTTGTTGCATTGGTCCTAACTCTTCGGAGACAGAGTATAGTTATGATATATTGGCCAGGTCTCAGAGAGGCAAACTGGGATTACAGTCTTTTGCAAAGAATGTTCAACGGTTTACTTTAGCAACTATTTCATCAGAGTTCCTTCTGATTTCATTTGAATCTTCTGAACCTCGCAAGTTACAAATTTGCATAAACCCCCACTATGCTCCCATGATGCAAATCTGCATAATGACCCTAATTGGAGTGATGATCCCCCTGAGGGTTAGGAGTTCAGATACGATAGTCGATGTGAAGAAGATTTTTGACAAGGCACGCTACCCAGTGCACGAGCAACGTCTGGTTTTTGACGATCGCAGACTCGAAGACAGTCAGACCCTTGCCAATTACAACACCCAAGAGAGATTGTTAATGACAGTAGACGTAGGGACCTTGCTAAATGAAGTGTGGGGTAAAAGCCACATCTGA 792 0.3965 MIKYPFWSDMENDKPGEKISYIGNRMHEDECIHEPCYCPLSDCDFVASSEILSNHFSEKHRDSQIKLSYDHLFFVSLKSNDETIVLQEENDGKLFILNNSTVILRKAVNICCIGPNSSETEYSYDILARSQRGKLGLQSFAKNVQRFTLATISSEFLLISFESSEPRKLQICINPHYAPMMQICIMTLIGVMIPLRVRSSDTIVDVKKIFDKARYPVHEQRLVFDDRRLEDSQTLANYNTQERLLMTVDVGTLLNEVWGKSHI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00014 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 17 174 IPR044286 -
Trre10g00014 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 56 IPR013083 -
Trre10g00014 263 SUPERFAMILY Ubiquitin-like 171 243 IPR029071 -
Trre10g00014 263 SUPERFAMILY TRAF domain-like 21 174 - -
Trre10g00014 263 ProSiteProfiles Ubiquitin domain profile. 181 242 IPR000626 GO:0005515
Trre10g00014 263 SMART ubq_7 181 249 IPR000626 GO:0005515
Trre10g00014 263 Pfam Ubiquitin family 186 243 IPR000626 GO:0005515
Trre10g00014 263 Gene3D - 175 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00014 Trre-Chr10 135090 139451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00014 181 242 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 53.968 1.82e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00014 - K04506 mtr:11432566 247.669