Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00011 ATGGGAAAAGAGGAAGTGGTGTTGTCGTCGTGCTCTTCTGATTCCAGCGATGATGACGATGATTATGAAGTTGAAGAACGGAAATCTCAGAATGTGGAAGCCCTCATAAGTGGTAACCTGATCTTGAAGAGACAATCGTTGCTGCCGCGAGTATTGTCGACTAATGGAGCGGCTTCTGTTTGCAGAAAACCTTTCAAACCTCCATCGGAAGATGCTTCTTATAATAATCAACAAGACCTTGCTCGTAGGCTCTCTGCTCGCAAAAGGTTTGTTCCATGGGGATCTACTACTCCTATTCCTATTCCGACATCCACCACCACCACCACCGCCACACCTTTGGAGGATAAGGATGAGGTTCCTTTGCCCCCTGGTATTGATCCTCTAATACTCTGGCACCCTCCTCCGGATGAGGAACCTTCTAATTCTAATTTCACTACAATATCAGTTGATCCCTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTTATGTTTGACTGTGTTGCCGGACTATGCGACACACCCGACATCTATGGATGCATTTTGGCAGATGATATGGGTTTGGGTAAGACATTGCAGTCCATCACATTGCTGTATACTCTTATTTGTCAAGGCTTCGATGGGAAGCCTATGGTTCGAAAGGCCATCATTGTCACTCCTACCAGCCTTGTCAGCAACTGGGAAGCTGAAATCAACAAGTGGCTTGGACAAAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCCGGGATTAACAGTTTTACAAGTCCCCAAAGCAAATTACAGGTGCTCATTGTTTCATACGAGACATTCCGAATGCATTCCTCAAAGTTTAGCTGTAGTGACTCATGTGATCTCCTCATATGTGATGAGGCTCACAGACTGAAAAATGACCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAAGAATTTTTCGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGGCATTGCACATTTTCGACGTTACTTTGAGGCACCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGACGGACTAATGCTTTGTTATCAAATCACTTACCACCAAAGATAATCGAAGTTGTTTGTTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACTGAAGCAATCGAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACAATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCCGGAAGGTCTGGATCATGGACAGGAGGGCATGGAGGCTGGGTTGAGCTTTCCGGGAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAAAGAACAAATGACCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGAGCTACATCAATCAGTAAACGGCAAAAGTTGGTCAACTGCTTGAACGACCTGTCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAACCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGCCAGAAGAAAAGAGTTTATATTTATAGATTTCTGAGTGCAGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAATGCGATAGCGCCGTGGCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAATGTTAAGTCAGAGATTCATGAAAAGATGCGATGCAATCGGTGCCAACCATATGATGGGCCTCAAGACACTGATGTCTTATCGACAATGATTAATAGTGAATGCGATGATGAGGACACCTCTGATATAGGTGGATTTGCTGAAATTGCAGGCTGCTTAGGGAATTTGAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTTGTTGGGGCCATCATTTTTCCCCAACCTCTGTACCAGATGCTATCCTTCAGGCTGCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGACGGAAAGCTGGTACCGGTTGACTCCATAATCAGTCCCAAGCTACAGAAAAAGGAATTACACCAGCCAAGGAGGAACGTCGAGCGCAAATCCACCCCCTTTGCTTTACATAATAAGCTAGTACCACTACGTTCTGCATCTAGTATTGCCACCGTGTCATGCTCATCTCCAATTGCTTGGACAAAGGAAGCAACAAATTGTGTAAGAATTACCAAAAATATCTCCACGAGTGTAGCATTAAACACCAAACACTCTCTTGTAAACGAAGTGTCAAGACAGAAAAGATCATGCCCTGTTGATACCAATAGTGGGCACTCTCTCGTAAATGAAGTATCACAGAAAAAACCATGTCATGTTGATGACAATGACGATGACTTTGAGTAA 2760 0.4312 MGKEEVVLSSCSSDSSDDDDDYEVEERKSQNVEALISGNLILKRQSLLPRVLSTNGAASVCRKPFKPPSEDASYNNQQDLARRLSARKRFVPWGSTTPIPIPTSTTTTTATPLEDKDEVPLPPGIDPLILWHPPPDEEPSNSNFTTISVDPLLVRFLRPHQREGVQFMFDCVAGLCDTPDIYGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWLGQRVRLVALCETTRQDVISGINSFTSPQSKLQVLIVSYETFRMHSSKFSCSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDLSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQCDSAVAQGNFLSTEDLRNLFTFDENVKSEIHEKMRCNRCQPYDGPQDTDVLSTMINSECDDEDTSDIGGFAEIAGCLGNLKRSEKQVGNPLEEDLSCWGHHFSPTSVPDAILQAAAGDEVTFVFTNQVDGKLVPVDSIISPKLQKKELHQPRRNVERKSTPFALHNKLVPLRSASSIATVSCSSPIAWTKEATNCVRITKNISTSVALNTKHSLVNEVSRQKRSCPVDTNSGHSLVNEVSQKKPCHVDDNDDDFE 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00011 919 MobiDBLite consensus disorder prediction 97 113 - -
Trre10g00011 919 FunFam DNA repair and recombination protein RAD54-like 505 673 - -
Trre10g00011 919 SMART ultradead3 153 356 IPR014001 -
Trre10g00011 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 398 IPR027417 -
Trre10g00011 919 PANTHER SNF2/RAD54 FAMILY MEMBER 51 794 - -
Trre10g00011 919 MobiDBLite consensus disorder prediction 888 902 - -
Trre10g00011 919 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 673 IPR001650 -
Trre10g00011 919 MobiDBLite consensus disorder prediction 1 26 - -
Trre10g00011 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 790 IPR027417 -
Trre10g00011 919 SMART helicmild6 542 626 IPR001650 -
Trre10g00011 919 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 348 IPR014001 -
Trre10g00011 919 MobiDBLite consensus disorder prediction 888 919 - -
Trre10g00011 919 Gene3D - 135 397 IPR038718 -
Trre10g00011 919 Gene3D - 398 704 IPR027417 -
Trre10g00011 919 CDD DEXHc_RAD54 157 398 - -
Trre10g00011 919 FunFam DNA repair and recombination protein RAD54 127 397 - -
Trre10g00011 919 Gene3D - 420 689 - -
Trre10g00011 919 MobiDBLite consensus disorder prediction 95 118 - -
Trre10g00011 919 Pfam Helicase conserved C-terminal domain 517 625 IPR001650 -
Trre10g00011 919 CDD SF2_C_SNF 509 637 - -
Trre10g00011 919 FunFam Predicted protein 420 494 - -
Trre10g00011 919 Pfam SNF2-related domain 160 466 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00011 Trre-Chr10 104743 113013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00011 505 684 RAD5 or RAD16-like Gene Family AT5G43530 34.254 1.62e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre10g00011 SNF2_N 3.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00011 K10875 - gmx:100781631 1348.95