Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9g00002 ATGGTTGGCAAAAATGATGCTACTTTTAGGAGCACTCCCCATAAACACAAACTGAACTTTATGCGTGGGACTAAGGTGTTCAAAGTCACTGCAGATGAAATACCAATGAATCATTTTGATTTCATGCATTTTCAAGAGATTCTGTTAAAGCCAGATGACAATCAAATGCTTGATGTTATTGGTCATGTTGTTGAGAAAAATGAAATCAAGGAGAAAATGGCAAGACAAGTAAGAGGTAACAGGGTCCATTGCACTTTGTGGGATGGTTTTGCTATAAAAATGAATGAATTCTTGGCTAACCATGACTCATCACTGCCTGTGGTAGTCATATTCCAGCTTTGCAAGCTTAAGAAGTTCCTTGGTACTATGGGAATTTCAAATTCCTTTTTTGGGTCAAAGTTGCTGCTAAATGCTTCTATCCCAGAAGTATCTGATTATATAGAAAGGATGGATGCTGCTAATGTGGAGCTTACTCAAGGGGTTAGTCAAATGACTGGACCTGTTGTTGTTAGCCTTGAAGATGATCTGTTGCAGACTCCAAAGATGACTATCGAGGATCTCATTGAATCTACTCAGGCATGTGAGCTTGACATGGATGCAGGTTGGTTTTATCAAGCTTGCACCAGTTGTGCAAGTAGAATTACTTTCATGGGTGGTCAACTCTATTGTGGGAAATGCAAGCTGCCAAGGACTGTTGTCCCTAGGTTCAAGGTTCATCTTCAGGTCATTGATAACACTGGATCAATAACTTTTGTGATGTTTGACAAAACCATCACTCAAGTTATAGGGAGGACGGCACAAGATCTGCTTGATGGAATGAATAATGAACGTACCACTGGCAGCTATCCACAAGAACTTGATGTGTTTGTAGACAAGCGAATGCTTTTTAAGATTGAGGTGGCTGATGCTAATTTGTATCGCAACTGGCGCAATTACAATGTGAAGAAGTTAACAGATGATGAGGATATCATCAACCGCTTCACAACCCTACACGGAATCAATGTTGGAAGGGATGCTGATGATCCTAATAACAAATACTTTGAAACTGATCTTGGAGACTACACTTTGGTGGATGTACCTGAGGGAGGGGATTCAACTAACAATGAGGAGGTGGTGCTCCTTGACACGTTTGGCACTCCGGCTAGCAAACCATCTACAAAAATTTCTGATAATGCTGATGGAGCTGGTGCATCGGCGACCAAAGGACCATCTCCTACTGCTAGAGCACTCACTTTTTCTGATTCTTCTCAACACTCACCTAGCAAGAATGTTGGAAAGAGGGTTTCTGATGTTGAAATGTGCGAGGTTGCTACCTTAAAGGAAATTAAGACTGCCTGCAGAAGGAAAAAGGATTCAACTCAGCACTCATCAGGCAAGGGTGTTGGAAAGAGGTTTGCTAATGTGGATGGAGGCCAGGTCTCTGCATCAAAGGAGAGCAAGGTGGTGTGCATGAAAATAAGGATGCTAAGTATCTCATTTAAGGGGTCATTGGCTCCTGTGTAG 1503 0.4185 MVGKNDATFRSTPHKHKLNFMRGTKVFKVTADEIPMNHFDFMHFQEILLKPDDNQMLDVIGHVVEKNEIKEKMARQVRGNRVHCTLWDGFAIKMNEFLANHDSSLPVVVIFQLCKLKKFLGTMGISNSFFGSKLLLNASIPEVSDYIERMDAANVELTQGVSQMTGPVVVSLEDDLLQTPKMTIEDLIESTQACELDMDAGWFYQACTSCASRITFMGGQLYCGKCKLPRTVVPRFKVHLQVIDNTGSITFVMFDKTITQVIGRTAQDLLDGMNNERTTGSYPQELDVFVDKRMLFKIEVADANLYRNWRNYNVKKLTDDEDIINRFTTLHGINVGRDADDPNNKYFETDLGDYTLVDVPEGGDSTNNEEVVLLDTFGTPASKPSTKISDNADGAGASATKGPSPTARALTFSDSSQHSPSKNVGKRVSDVEMCEVATLKEIKTACRRKKDSTQHSSGKGVGKRFANVDGGQVSASKESKVVCMKIRMLSISFKGSLAPV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9g00002 500 SUPERFAMILY Nucleic acid-binding proteins 182 318 IPR012340 -
Trme9g00002 500 CDD RPA1_DBD_B_like 58 151 - -
Trme9g00002 500 SUPERFAMILY Nucleic acid-binding proteins 38 152 IPR012340 -
Trme9g00002 500 MobiDBLite consensus disorder prediction 378 428 - -
Trme9g00002 500 MobiDBLite consensus disorder prediction 446 467 - -
Trme9g00002 500 CDD RPA1_DBD_C 195 320 IPR047192 -
Trme9g00002 500 Gene3D - 182 327 IPR012340 -
Trme9g00002 500 PANTHER OS03G0429900 PROTEIN 47 307 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme9g00002 500 Pfam Replication factor-A C terminal domain 202 301 IPR013955 -
Trme9g00002 500 Gene3D - 32 159 IPR012340 -
Trme9g00002 500 MobiDBLite consensus disorder prediction 378 393 - -
Trme9g00002 500 MobiDBLite consensus disorder prediction 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9g00002 Trme-Chr9 8324 10687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9g00002 9 301 Core DNA Replication Machinery Family AT5G08020 22.699 2.56e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9g00002 - - tpra:123896123 493.426