Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme999850g00001 AGAGCTTCTGCTGAGGTGCTTGGGAAAGGAACATTTGGTACTGTTTATAAGGCTGCTTTAGAGGATGCAACGACAGTCGCGGTTAAGAGGTTAAAGGAGGTTACAGTTGGGAAACGCGAGTTCGAACAGCAGATGGAGATTGTGGGGAGGATTAGGCATGATAATGTGGCTGCATTAAGGGCTTATTACTATTCAAAGGAGGAGAAACTTATGGTTTATGATT 223 0.4395 RASAEVLGKGTFGTVYKAALEDATTVAVKRLKEVTVGKREFEQQMEIVGRIRHDNVAALRAYYYSKEEKLMVYD 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme999850g00001 74 ProSitePatterns Protein kinases ATP-binding region signature. 7 38 IPR017441 GO:0005524
Trme999850g00001 74 SUPERFAMILY Protein kinase-like (PK-like) 5 74 IPR011009 -
Trme999850g00001 74 PANTHER OS05G0588300 PROTEIN 1 74 - -
Trme999850g00001 74 Gene3D Phosphorylase Kinase; domain 1 2 74 - -
Trme999850g00001 74 ProSiteProfiles Protein kinase domain profile. 1 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme999850g00001 74 Pfam Protein kinase domain 4 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme999850g00001 Trme-Chr999850 1 223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme999850g00001 1 74 Receptor kinase-like Gene Family AT4G23740 79.730 2.24e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme999850g00001 Pkinase 1.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme999850g00001 - - aprc:113851984 141.354