Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9994g00001 GATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCACTTGTTCAGCCTGTTTGTTTGGTTGGGAGTACTCTTCGTGCTCCTCACGGTTGTCATGCTCAGTATATGGCGAATATGGGTTCCATTGCTTCTTTGGTTATGGCTGTTATTATTAATGGGAATGATGAAGAGGGTGGTGGGATTGGTGGTACGGGAAGAAGTTCGATGAAACTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTTTAATGCAGGCTTTTGGGCTTCAATTGAATATGGAACTTCAGTTAGCCGTGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATTGTTACGCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGATGGGGCTGCTTTGTATTATCAGGGAAACTACTATCCTTTGGGTGTTACTCCGACGGAGTCTCAGATAAGGGATATTATAGAGTGGTTGTTGGCCTTCCATGGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCGGATGCTGGCTATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCTGTTGCATATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCTCATACGGCAAAAGAGATTAAATGGGGTGGTGCGAAACATCACCCAGAGGATAAAGATGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCCTTTTTAGAAGTAGTGAAGAGCCGTAGTATGCAGTGGGAGAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCATTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTTGTGCATACTCATATGGCAGAACTAGAGTTGCAGGGGGTGGATGAACTGAGTTCCGTGGCTAGAGAAATGGTGAGGCTAATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCAAAGGCCGTATCAATGGGTGGAATGCAAAGGTTTCTGAATTGACGGGACTTCTGGTAGAGGAGGCTATGGGGAAGTCTTTGGTTCATGATATTGTGTATAAGGAGTCTCAAGAAACTGTGGACAAGCTTCTTTCTCATGCTTTAAAAGGTATTCTTTCTAAATTTCTGGTTCCATGCCGATTCATTGGGTTTATTAGGCAGGAGAAATCCAATTAA 1248 0.4415 DCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGGGIGGTGRSSMKLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVKGRINGWNAKVSELTGLLVEEAMGKSLVHDIVYKESQETVDKLLSHALKGILSKFLVPCRFIGFIRQEKSN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9994g00001 415 SUPERFAMILY PYP-like sensor domain (PAS domain) 329 394 IPR035965 -
Trme9994g00001 415 Gene3D - 10 113 IPR029016 -
Trme9994g00001 415 Pfam PAS fold 327 390 IPR013767 GO:0006355
Trme9994g00001 415 Gene3D - 114 299 IPR043150 -
Trme9994g00001 415 ProSiteProfiles PAS repeat profile. 324 395 IPR000014 -
Trme9994g00001 415 FunFam Phytochrome 114 244 - -
Trme9994g00001 415 PRINTS Phytochrome signature 257 275 IPR001294 GO:0006355|GO:0009584
Trme9994g00001 415 PRINTS Phytochrome signature 224 243 IPR001294 GO:0006355|GO:0009584
Trme9994g00001 415 PRINTS Phytochrome signature 327 343 IPR001294 GO:0006355|GO:0009584
Trme9994g00001 415 PRINTS Phytochrome signature 27 48 IPR001294 GO:0006355|GO:0009584
Trme9994g00001 415 PRINTS Phytochrome signature 346 361 IPR001294 GO:0006355|GO:0009584
Trme9994g00001 415 PRINTS Phytochrome signature 139 159 IPR001294 GO:0006355|GO:0009584
Trme9994g00001 415 Pfam Phytochrome region 122 297 IPR013515 GO:0006355|GO:0009584
Trme9994g00001 415 SMART pas_2 326 393 IPR000014 -
Trme9994g00001 415 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 1 99 IPR016132 -
Trme9994g00001 415 Pfam GAF domain 14 109 IPR003018 GO:0005515
Trme9994g00001 415 PANTHER OS08G0260000 PROTEIN 6 373 - -
Trme9994g00001 415 SUPERFAMILY GAF domain-like 117 295 - -
Trme9994g00001 415 SUPERFAMILY GAF domain-like 2 106 - -
Trme9994g00001 415 Gene3D PAS domain 323 399 - -
Trme9994g00001 415 NCBIfam PAS domain S-box protein 331 393 IPR000014 -
Trme9994g00001 415 CDD PAS 335 395 IPR000014 -
Trme9994g00001 415 ProSitePatterns Phytochrome chromophore attachment site signature. 27 36 IPR013516 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9994g00001 Trme-Chr9994 479 1726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9994g00001 1 394 Histidine Kinase Gene Family AT2G18790 78.894 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9994g00001 K12121 - gmx:100799831 701.049