Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme999328g00001 ATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAACTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGTAAACATGTTGGTGAGAAAGCACATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCTATGTATGGACCTAG 212 0.4387 MRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKAHRLWLGTFSTAHEAALAYDKAAKAMYGP 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme999328g00001 70 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Trme999328g00001 70 CDD AP2 12 70 IPR001471 GO:0003700|GO:0006355
Trme999328g00001 70 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 70 - -
Trme999328g00001 70 SUPERFAMILY DNA-binding domain 13 69 IPR016177 GO:0003677
Trme999328g00001 70 Pfam AP2 domain 12 69 IPR001471 GO:0003700|GO:0006355
Trme999328g00001 70 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Trme999328g00001 70 SMART rav1_2 13 70 IPR001471 GO:0003700|GO:0006355
Trme999328g00001 70 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Trme999328g00001 70 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Trme999328g00001 70 FunFam Ethylene-responsive transcription factor 2 12 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme999328g00001 Trme-Chr999328 13 224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme999328g00001 1 70 AP2-EREBP Transcription Factor Family AT1G75490 65.714 3.53e-28 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme999328g00001 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme999328g00001 - - tpra:123891882 143.28