Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99841g00001 AGCAGCTCATGTGACGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTAGAGTATCTAGATGTTGAGTCTGGAAAGCTGAGTGATAGCGACGAGACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCTTGCGTTCTTTCTGAGTTTTCTGTCCTTCATGAAGCCTTGCAGTTGACCCATATGGCAGAGGATTTGAGTGACAGTAATTTTGGAACCTCTGATACCAATGACAGTGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCGTGAACTGTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACTGGTGCTGAA 597 0.402 SSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQLTHMAEDLSDSNFGTSDTNDSDDVKKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGKHFTVEEQDKIVGRIIGTTGAE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99841g00001 199 CDD Hr-like 14 174 - -
Trme99841g00001 199 Gene3D nmb1532 protein domain like 8 193 - -
Trme99841g00001 199 Pfam Hemerythrin HHE cation binding domain 12 175 IPR012312 -
Trme99841g00001 199 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 55 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99841g00001 Trme-Chr99841 96 692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99841g00001 1 199 C2H2 Transcription Factor Family AT3G18290 72.362 1.37e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99841g00001 K16276 - gmx:100801725 377.481