Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9977g00001 ATGCCAGTGTTGGGGTGGGCCAATAGGCTGAAGATAGCTATTGGTGCTGCAAAGGGCTTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCTGCCAACATACTTTTGGATGAAGCTTTTGAGGCACAGGTTGCGGACTTTGGACTTGCAAGGCTAGCTGATGCTGCGAATACGCATGTATCAACTAGGGTTATGGGTACATTTGGGTACATGGCCCCAGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGTGTTGTCCTGCTTGAGCTTGTAACTGGAAGAAAACCAGTTGATGAAACTATGCCTTTAGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACAACTCATTCATGCATTTGAGACACGTGAGTTTGGTGAACTAGTAGATCCAAGACTAGAAAAACACTATGTGGAGAGTGAAATGTTCAGAATGATAGAGGCAGCTGCAGCTTGT 498 0.4398 MPVLGWANRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDEAFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETMPLGDESLVEWARPQLIHAFETREFGELVDPRLEKHYVESEMFRMIEAAAAC 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9977g00001 166 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9977g00001 166 Pfam Protein kinase domain 12 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9977g00001 166 SUPERFAMILY Protein kinase-like (PK-like) 4 158 IPR011009 -
Trme9977g00001 166 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 2 166 IPR047117 -
Trme9977g00001 166 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9977g00001 166 Gene3D Transferase(Phosphotransferase) domain 1 1 166 - -
Trme9977g00001 166 FunFam proline-rich receptor-like protein kinase PERK8 1 166 - -
Trme9977g00001 166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9977g00001 Trme-Chr9977 312 1504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9977g00001 2 166 Trihelix Transcription Factor Family AT1G70460 80.606 1.66e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme9977g00001 Pkinase 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9977g00001 - - gmx:100797563 303.138