Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme997516g00001 | GCGCTTGTTTCTATTTTGGCTTCTTCGGATAAGGAAGAGCTTGTTACTGAAGCTTTGGCTGTTCTTGCTGCACTTGCTGAGAATTTTGATGGAGCGAATGCTGTTTGTGAAGCTTCTGCATTGACTTTGATTATTGGGATGTTGAGGTCTTCTACTTCGCATGTTGGGAAGGAACATTGTGCTTCGATTTTGTTGTCGTTGTGTGTTAATGTTGGTGTGGATGT | 224 | 0.4241 | ALVSILASSDKEELVTEALAVLAALAENFDGANAVCEASALTLIIGMLRSSTSHVGKEHCASILLSLCVNVGVDV | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme997516g00001 | 75 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 1 | 40 | IPR000225 | GO:0005515 | |
| Trme997516g00001 | 75 | SUPERFAMILY | ARM repeat | 2 | 69 | IPR016024 | - | |
| Trme997516g00001 | 75 | Gene3D | - | 1 | 73 | IPR011989 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme997516g00001 | 1 | 68 | U-box Gene Family | AT1G23030 | 41.176 | 1.10e-10 | 53.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme997516g00001 | - | - | tpra:123884536 | 118.627 |