Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99676g00001 ATGGGCGTAGTTCTACAGCTTCCTAATGGTGGTTACAGAGCACACTGCAAGGGCGCCTCTGAAATAATTCTCGCTGCATGTGACAAATTTGTAGACAAAAATGGCGAGGTTGTTCCACTTGATGAAGATTCCATCCGTCACTTGAATGATACAATTGAAAACTTTGCCAATGAAGCTCTCCGGACCCTTTGCCTTGCTTATGTGGATATTCATGATGAATTTTTAGTTGGAAGTCCTATTCCTATTGATGGTTACACTTGTATAGGAATAGTGGGTATTAAAGATCCAGTTCGACCCGGTGTTCGAGAGTCTGTAGCCATTTGTAGGGCAGCTGGTATTACTGTTAGGATGGTTACCGGAGACAACATAAATACTGCAAAGGCAATTGCTAGAGAATGTGGAATTTTAACAGATGGTATAGCGATTGAAGGCCCCGAATTCCGTGAGATGAGTGAGGAGAAATTGCTTGATATCATTCCCAAAATTCAG 489 0.4213 MGVVLQLPNGGYRAHCKGASEIILAACDKFVDKNGEVVPLDEDSIRHLNDTIENFANEALRTLCLAYVDIHDEFLVGSPIPIDGYTCIGIVGIKDPVRPGVRESVAICRAAGITVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREMSEEKLLDIIPKIQ 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99676g00001 163 Gene3D - 1 91 IPR023299 GO:0000166
Trme99676g00001 163 Pfam haloacid dehalogenase-like hydrolase 88 159 - -
Trme99676g00001 163 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 101 IPR023299 GO:0000166
Trme99676g00001 163 FunFam copper-transporting ATPase 1 isoform X2 91 136 - -
Trme99676g00001 163 Pfam Cation transport ATPase (P-type) 1 29 - -
Trme99676g00001 163 PANTHER CATION TRANSPORTING ATPASE 1 163 - -
Trme99676g00001 163 PRINTS P-type cation-transporting ATPase superfamily signature 89 100 - -
Trme99676g00001 163 PRINTS P-type cation-transporting ATPase superfamily signature 111 121 - -
Trme99676g00001 163 SUPERFAMILY HAD-like 80 154 IPR036412 -
Trme99676g00001 163 Gene3D - 92 161 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99676g00001 Trme-Chr99676 54 542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99676g00001 1 163 Primary Pumps ATPases AT1G27770 74.390 1.00e-82 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99676g00001 K01537 - gmx:547998 283.108