Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99556g00001 CCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTTGGAGCCACCGATTATGATGTAGGAGTGGACCTGTGGAGTGCCGGCTGTATTCTTGCTGAATTGTTAGCTGGAAGGCCTATTATGCCCGGTCGAACAGAGGTGGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGGCAAAGCTACCACACGCTACAATTTTTAAGCCGCAACAATCATATAAGCGATGCATAGCAGATAAATTTGAAGATTTCCCACCATCATCATTGCCACTAATTGAAACCCTTCTAGCAATCGATCCAGATGAACGTCAAACAGCCACTGCTGCATTGCACAGTGAATTCTTTATGACACAACCTTATGCTTGTGAACCCTCTAACCTTCCAAAATATCCTCCCA 439 0.4305 PMTSRVVTLWYRSPELLLGATDYDVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKAKLPHATIFKPQQSYKRCIADKFEDFPPSSLPLIETLLAIDPDERQTATAALHSEFFMTQPYACEPSNLPKYPP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99556g00001 146 PANTHER CELL DIVISION PROTEIN KINASE 1 133 - -
Trme99556g00001 146 Pfam Protein kinase domain 2 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme99556g00001 146 SUPERFAMILY Protein kinase-like (PK-like) 2 134 IPR011009 -
Trme99556g00001 146 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
Trme99556g00001 146 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99556g00001 Trme-Chr99556 27 693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99556g00001 2 144 Core Cell Cycle Gene Families AT5G10270 50.694 1.23e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme99556g00001 Pkinase 4.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99556g00001 K08819 - cave:132179149 283.108