Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99529g00001 ATGCAAAATTTTAGTATTTCTGTCGAGCTTGTAAGTTTGGGATCTGTTATGTGTGGAAATCATTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCAGCAAACACCTGTTACTATGTTTCTGAAGTCATTGATGGTGGATTTCTTGGGCCTTTTTTCAGGGTTACCTTGGAAGAACATCCGAAAGAGGTTTTCACAAAGACCACAGCAGATAAGTGTTGGGAAACAGTTATTGACAGACTAAATTGTGAAATCAATCGGCGCAGGAGTCTTGGTGAACTAAACATGCCCCGCTTGGAACTACTGCAAAACATCAACGGTCATAAAATGTTTGGATTCCTTTCGCCGTCCATTATTCAG 396 0.399 MQNFSISVELVSLGSVMCGNHWCSKHAIYPKGFKSRVKFFSILDPANTCYYVSEVIDGGFLGPFFRVTLEEHPKEVFTKTTADKCWETVIDRLNCEINRRRSLGELNMPRLELLQNINGHKMFGFLSPSIIQ 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99529g00001 132 ProSiteProfiles FYR domain FYRC motif profile. 60 132 IPR003889 GO:0005634
Trme99529g00001 132 Pfam F/Y-rich N-terminus 7 55 IPR003888 GO:0005634
Trme99529g00001 132 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 10 131 IPR040092 -
Trme99529g00001 132 Gene3D - 5 132 - -
Trme99529g00001 132 SMART fyrn_3 14 58 IPR003888 GO:0005634
Trme99529g00001 132 ProSiteProfiles FYR domain FYRN motif profile. 1 58 IPR003888 GO:0005634
Trme99529g00001 132 Pfam F/Y rich C-terminus 62 132 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99529g00001 Trme-Chr99529 13 656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99529g00001 2 132 JUMONJI Transcription Factor Family AT1G30810 50.382 8.18e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99529g00001 K11446 - gmx:100814590 211.46