Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99454g00001 ATGGAAAGTTCATTGGCCTTATCAGGTGCTCCAATGAATTTTACTTACCGCGCTTTGCAAATCAGGACGAGCAACTTTTCGCAACTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCCTAGGAGATGGTACCCTAGTGGCAGTGAAAAAACTTGATAAGATTTTGCCTCATGGTGAAAAAGAATTTATCACTGAAGTAAACACAATTGGATCAATGCATCATATGAATTTGGTTCGTCTATGCGGCTTTTGCTCTGAGGGACCGCACAGGCTTTTGGTTTATGAGTACATGAAGAATGGTTCATTGGATAAATGGATCTTCCCTTCGTATCGAGGGCGAGATAGA 354 0.4153 MESSLALSGAPMNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPHRLLVYEYMKNGSLDKWIFPSYRGRDR 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99454g00001 118 PANTHER OS07G0415500 PROTEIN 5 111 - -
Trme99454g00001 118 Pfam Protein tyrosine and serine/threonine kinase 26 109 IPR001245 GO:0004672|GO:0006468
Trme99454g00001 118 ProSiteProfiles Protein kinase domain profile. 24 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme99454g00001 118 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Trme99454g00001 118 Gene3D Phosphorylase Kinase; domain 1 2 99 - -
Trme99454g00001 118 SUPERFAMILY Protein kinase-like (PK-like) 7 111 IPR011009 -
Trme99454g00001 118 FunFam serine/threonine-protein kinase PBS1-like 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99454g00001 Trme-Chr99454 25 693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99454g00001 2 110 Receptor kinase-like Gene Family AT1G56120 50.450 1.04e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme99454g00001 PK_Tyr_Ser-Thr 7.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99454g00001 - - tpra:123904109 241.891