Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99312g00001 GTCCCTTGCCAAAAGAAAGGAGGCATAAGATTTACAATCAATGGTCATTCATACTTTAACCTAGTACTAATTACCAACGTTGGAGGTGCTGGTGATGTTACTGCAGTTTCCATCAAAGGTTCAAAAACTAATTGGCAACCAATGTCTAGAAATTGGGGTCAAAATTGGCAAAGCAACTCTCACCTCGACGGACAAAGTCTCTCGTTTAAGGTCACTTCTAGCGATGGTCGGACTGTGGTTGCTAATAATGTTGCACCCGCTGGATGGTCCTTTGGTCAGACCTTCAGCGGCATTCAGTTCTGA 303 0.4389 VPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSKTNWQPMSRNWGQNWQSNSHLDGQSLSFKVTSSDGRTVVANNVAPAGWSFGQTFSGIQF 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99312g00001 100 PRINTS Expansin signature 19 40 IPR002963 GO:0009664
Trme99312g00001 100 PRINTS Expansin signature 54 75 IPR002963 GO:0009664
Trme99312g00001 100 PRINTS Expansin signature 7 19 IPR002963 GO:0009664
Trme99312g00001 100 PRINTS Expansin signature 83 99 IPR002963 GO:0009664
Trme99312g00001 100 Pfam Expansin C-terminal domain 9 86 IPR007117 -
Trme99312g00001 100 FunFam Expansin 8 100 - -
Trme99312g00001 100 Gene3D - 5 100 IPR036749 -
Trme99312g00001 100 SUPERFAMILY PHL pollen allergen 5 96 IPR036749 -
Trme99312g00001 100 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 18 97 IPR007117 -
Trme99312g00001 100 PANTHER EXPANSIN-A15 1 99 IPR002963 GO:0009664
Trme99312g00001 100 PRINTS Expansin/Lol pI family signature 83 97 IPR007118 GO:0005576
Trme99312g00001 100 PRINTS Expansin/Lol pI family signature 45 59 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99312g00001 Trme-Chr99312 103 405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99312g00001 1 100 Expansin Gene Family AT2G03090 79.000 1.00e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99312g00001 - K20628 fve:101301198 195.667