Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9922g00001 ATGAGAGAGAGTGTAGAGAGAGAAACAGGAGGTAGGGAAGGGAACTCTAGGGCAAATTCAGGTAAGAAGAAAGGTTTTTTTCACCATCTTGACCAGGTGACAACTTCTTTCTTCATCACCAATTTCCCAGAGGATGCTACAACAGGTGATCTTTGGAAACTCTTCCTAAAATTTGGGAGGATAGGTGAGGTCTACATTCCAAAGAAGCTAGATAAGAGGGGAAGGAGGTTTGGTTTTGTCAAGTTTAAGGAGGTACAAGATGTGGAGGCTCTTAGTGAAAGTTTGAGAGATGTATGGCTTGGTTCCTTCAAACTGTGGGTTAATCGCTCACGGTTTGGTCGTTCAGATAGTAAGGAAACTCAGCCAACCAAAACTGGATCTCATCGCCAAGTTTTGAATTTGGAGGAAACGGTGTCTGGTAGGTCTTTTCGAACGGCTTTGGCAGGTGGTGAGACCTCGGTGAAGTCTCARGCTTTGAAGGTGCCGGTTAATGAAGACCTGTGTAGGGAGCTAAGGAGTAGTGTTGTTGGAACTTTAGCACGTGAAAAGGATGTGAGAAGGATCCAAACAACTCTGTTTATGGAAGGGTATCGTTCGATCTCTGTCACGCATATGGGGGGTAATATGGCCCTGCTTAGAAGCCCGGTTGAAGGAGATGTTGACAGACTTCTGAAGAGCAAAAATGAATGCCTCCACTATTATTTCTCTAAGTTAAAACCTTGGAACCNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGGCATTCCTTTACACATTTGGGGTGAAAACTTCTTCAAATTGGTAGGGAATAGACTTGGTACCTTTCTGGACTTTGATGAGGAGACGGCTAGCATGGCCAGATTCGATGTGGCTAGGCTCAAAATTCTCACTACAACTTGGGCTCTCATTGATATGGCCTTGAAGGTGGAGGTTGAAGGTGTGTGTTTCAATCTATGGTTGGTGGAGGAGAGGGGGAAGCAGCGTTCGACGGTGGTGTGTAGTGGTGAGCAGGAGGATGTCGGTAGTCTTGTGGTTCCGGAAGAAGCCTCTGATGATGACGATTCAAAGTCAGGTGGCGGGGAGATCAATTCCGGCGAAGATGATGTGTCAGGCGATGAAGCAGAGTA 1139 0.4434 MRESVERETGGREGNSRANSGKKKGFFHHLDQVTTSFFITNFPEDATTGDLWKLFLKFGRIGEVYIPKKLDKRGRRFGFVKFKEVQDVEALSESLRDVWLGSFKLWVNRSRFGRSDSKETQPTKTGSHRQVLNLEETVSGRSFRTALAGGETSVKSQALKVPVNEDLCRELRSSVVGTLAREKDVRRIQTTLFMEGYRSISVTHMGGNMALLRSPVEGDVDRLLKSKNECLHYYFSKLKPWNXXXXXXXXXXXXXXXGIPLHIWGENFFKLVGNRLGTFLDFDEETASMARFDVARLKILTTTWALIDMALKVEVEGVCFNLWLVEERGKQRSTVVCSGEQEDVGSLVVPEEASDDDDSKSGGGEINSGEDDVSGDEAE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9922g00001 379 MobiDBLite consensus disorder prediction 343 379 - -
Trme9922g00001 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 102 IPR000504 GO:0003723
Trme9922g00001 379 SUPERFAMILY RNA-binding domain, RBD 30 121 IPR035979 GO:0003676
Trme9922g00001 379 Gene3D - 34 113 IPR012677 -
Trme9922g00001 379 SMART rrm1_1 36 108 IPR000504 GO:0003723
Trme9922g00001 379 CDD RRM_SF 38 105 - -
Trme9922g00001 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Trme9922g00001 379 PANTHER DUF4283 DOMAIN PROTEIN 137 361 - -
Trme9922g00001 379 MobiDBLite consensus disorder prediction 1 23 - -
Trme9922g00001 379 Pfam Domain of unknown function (DUF4283) 169 299 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9922g00001 Trme-Chr9922 1 1139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9922g00001 12 119 Eukaryotic Initiation Factors Gene Family AT1G71770 28.704 3.09e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9922g00001 - - vvo:131639233 155.606