Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9920g00001 GGACATAGATATTTACTCTCAGAGTTACAACATAATCAGACACCACCAAGTCCTGATTCTGTTCCATCATCTGGATCATCACCGACGCCAAAAAGTCAAGTTGCAGCACAAGTCAATTTGACACCTCCAGCTCCTGGACTTCCATACGATGATTTTCTGCTCACTCCACCATTTTCACCACCACCTCCTCCTCGTGCTACTTTTGATGACGAAAAACAACGGAAATCAATTATTATTGCTGGAGTTGCATCAGGAATTATAATCTTAATAGGCTTGTTCTTATGCTGTCGCGAGGTGAAGAAGAGAAAAATAATTGCGAGAGATGACAGGCCTTTACTCATATTAAGTGACTTCTCTGGTGGTAGTTCACAAAAGTCTATTGCTTTTGAAAATTCTGATACGAGAGAACATGGTATTAACTATGGAACGAATCCTTCTACTGTTAGGAATTTGTCCATTAAGCATGAAGTCAACAATGCTTCACTGAATGAGATAACATCATCAGATGACAAGGGACAAGTACCGGTGTCTCAATTAAAACATCCTCCAGGAAGATCAGCCCCTGAGGCTCCACCAACACCGCCGCCTCCACCACCTGCTCTTGCACCTCGGCCTCGGCCTCCACCTCCTCCAAAAATGTCTCAGGCTCCACCTGCTCCTCCCAAACCAATGGCAGGTAGAAACCAAAAATCACCTCTAGGACCACATCGTACTAGTGAGGGCGATGATGACTCCGCTCCAAAACCTAAACTAAAGCCATTTTTCTGGGATAAGGTTTCAGCAAATCCTGATCAAGCTATGGTCTGGCATGAGATCAGAGCCGGGTCATTCCAGTTCAGTGAAGAGAAGATAGAGTCTTTATTTGGCTGCCCCAACCAGAACAGAAATGCAAGACGAAAAGATGCTCCATCTTTAGAACCTTCGGTCCAGTACATTAAGATTATTGAGCCCAAGAAAGCACAGAATTTATCGATTCTTTTACGTGCTCTGAATGTGAGCACAAAAGAAGTTACTGACGCCCTTAATGAAGGCGATGACAATGAGGGGCATGCTACTTTAATCTCAATCATAAAAGAATTGTGGCCAATAATGATACTTTAA 1101 0.4332 GHRYLLSELQHNQTPPSPDSVPSSGSSPTPKSQVAAQVNLTPPAPGLPYDDFLLTPPFSPPPPPRATFDDEKQRKSIIIAGVASGIIILIGLFLCCREVKKRKIIARDDRPLLILSDFSGGSSQKSIAFENSDTREHGINYGTNPSTVRNLSIKHEVNNASLNEITSSDDKGQVPVSQLKHPPGRSAPEAPPTPPPPPPALAPRPRPPPPPKMSQAPPAPPKPMAGRNQKSPLGPHRTSEGDDDSAPKPKLKPFFWDKVSANPDQAMVWHEIRAGSFQFSEEKIESLFGCPNQNRNARRKDAPSLEPSVQYIKIIEPKKAQNLSILLRALNVSTKEVTDALNEGDDNEGHATLISIIKELWPIMIL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9920g00001 366 MobiDBLite consensus disorder prediction 236 251 - -
Trme9920g00001 366 MobiDBLite consensus disorder prediction 163 254 - -
Trme9920g00001 366 MobiDBLite consensus disorder prediction 185 225 - -
Trme9920g00001 366 MobiDBLite consensus disorder prediction 7 39 - -
Trme9920g00001 366 PANTHER FORMIN-RELATED 28 346 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trme9920g00001 366 Pfam Formin Homology 2 Domain 244 354 IPR015425 -
Trme9920g00001 366 MobiDBLite consensus disorder prediction 123 147 - -
Trme9920g00001 366 ProSiteProfiles Formin homology-2 (FH2) domain profile. 241 366 IPR015425 -
Trme9920g00001 366 MobiDBLite consensus disorder prediction 1 45 - -
Trme9920g00001 366 SUPERFAMILY Formin homology 2 domain (FH2 domain) 194 355 - -
Trme9920g00001 366 Gene3D Formin, FH2 domain 239 364 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9920g00001 Trme-Chr9920 220 1564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9920g00001 69 346 FH2 protein (formin) Gene Family AT4G15200 42.414 5.96e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9920g00001 - - qsa:O6P43_000616 254.603