Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99113g00001 ATGTCTGTATTCTACAAGTGCGGAATTTATGGATATCAAGATAGCTTGTATGCATATTCCATGCGCCAATTCTATAGGGAATGCACAATCAAGGGCACCGTGGACATTATTTTTGGAAATGCTATTGCTGTATTCCAAAACTGCACCATATTGGCAAAGAAAGGGTTGCCAAAACATAGCAACGCCATCACAGCCCAAGGGGGGAAATTTGGCGGACAGTCAACAGGTTTTTCATTTCAATTCTGCAACATCTCTGCAGATTTTGATCTTCTACCTTCAATCAAGTTTATTTCAACTTTCCTCGGGAGGCCATGGAAACCTTATTCCACTACGGTTTTCATGGAATCTTATATAGGGAATTTGTTGAACCCAAAAGGATGGCTGGCGTGGAATGGATCACAATATTTAGACACACTATTCTATGCAGAATATAAAAATTTTGGACCTGGAGCCACCACAAAAAACAGAGTGAAATGGAAGAG 482 0.4025 MSVFYKCGIYGYQDSLYAYSMRQFYRECTIKGTVDIIFGNAIAVFQNCTILAKKGLPKHSNAITAQGGKFGGQSTGFSFQFCNISADFDLLPSIKFISTFLGRPWKPYSTTVFMESYIGNLLNPKGWLAWNGSQYLDTLFYAEYKNFGPGATTKNRVKWK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99113g00001 160 SUPERFAMILY Pectin lyase-like 2 160 IPR011050 -
Trme99113g00001 160 Pfam Pectinesterase 1 160 IPR000070 GO:0030599|GO:0042545
Trme99113g00001 160 Gene3D - 1 160 IPR012334 -
Trme99113g00001 160 ProSitePatterns Pectinesterase signature 2. 30 39 IPR033131 -
Trme99113g00001 160 PANTHER PECTINESTERASE 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99113g00001 Trme-Chr99113 86 567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99113g00001 1 159 Carbohydrate Esterase AT3G43270 60.377 3.34e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99113g00001 K01051 - gmx:100798620 256.529