Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme99105g00001 ATGGCTATCCATGCTTCTCTTCAGCATGCCATTCAGGAGAGGCCAAGCTTTCCTGATGCCCAGCCTAACTCTCAAGCAAGCTCTTCTATCAGTGTNNNNNNNNNNGTGCAAGGTTTTCTTGGTACACCAAATACAAATGCTAATGAGTCTGTACACGAAGCTGTTCCAGCTGGCAATGTCTCTGCTGGCCATACTGCCAGTGATCTGGATTTCAATCCATCAGCTCCTCCATTTGCTGATGATGTTCCATCAGATGGCCCGATTCATTATCCTTCAATTGATTTGAGTCCTGTTGATGTGTCATCTCAAGTAGTTGAGAAGCNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGTGGCTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTTAAAACAAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCACGTTTGA 540 0.4093 MAIHASLQHAIQERPSFPDAQPNSQASSSISVXXXVQGFLGTPNTNANESVHEAVPAGNVSAGHTASDLDFNPSAPPFADDVPSDGPIHYPSIDLSPVDVSSQVVEKXXXXXXXXXXXXXXXXSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme99105g00001 179 ProSiteProfiles Zinc finger RING-type profile. 128 167 IPR001841 -
Trme99105g00001 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 178 IPR013083 -
Trme99105g00001 179 MobiDBLite consensus disorder prediction 17 52 - -
Trme99105g00001 179 PANTHER OS05G0521000 PROTEIN 125 178 - -
Trme99105g00001 179 MobiDBLite consensus disorder prediction 1 87 - -
Trme99105g00001 179 SUPERFAMILY RING/U-box 122 173 - -
Trme99105g00001 179 CDD RING-HC_XBAT35-like 124 177 - -
Trme99105g00001 179 SMART ring_2 128 166 IPR001841 -
Trme99105g00001 179 Pfam Zinc finger, C3HC4 type (RING finger) 126 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme99105g00001 Trme-Chr99105 52 591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme99105g00001 124 176 C3H Transcription Factor Family AT3G06140 33.962 1.59e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme99105g00001 - - lang:109354249 218.779