Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme990463g00001 | GATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGCAGTAGAGAAGTGGTGAAAGCCTTGCTTGAACTCGGTGCTGCGGATGTTAACTACCCGGCTGGTCCTTCCGGGAAAACACCACTTCATGTGGCCGCGGAGATGGTTTCACCGGAAATGGTAGCGGTTTTGCTTGACCACCATGCAGACCCGACAATTAGAACCGTTGATGGTGTAACACCTTTGGAT | 225 | 0.4978 | DEALALHYAVENCSREVVKALLELGAADVNYPAGPSGKTPLHVAAEMVSPEMVAVLLDHHADPTIRTVDGVTPLD | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme990463g00001 | 75 | ProSiteProfiles | Ankyrin repeat profile. | 36 | 68 | IPR002110 | GO:0005515 | |
| Trme990463g00001 | 75 | SMART | ANK_2a | 36 | 65 | IPR002110 | GO:0005515 | |
| Trme990463g00001 | 75 | SMART | ANK_2a | 1 | 31 | IPR002110 | GO:0005515 | |
| Trme990463g00001 | 75 | PANTHER | BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 | 1 | 75 | IPR044284 | GO:0099402 | |
| Trme990463g00001 | 75 | Pfam | Ankyrin repeats (3 copies) | 5 | 66 | IPR002110 | GO:0005515 | |
| Trme990463g00001 | 75 | SUPERFAMILY | Ankyrin repeat | 4 | 75 | IPR036770 | - | |
| Trme990463g00001 | 75 | ProSiteProfiles | Ankyrin repeat region circular profile. | 36 | 62 | - | - | |
| Trme990463g00001 | 75 | Gene3D | - | 1 | 75 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme990463g00001 | Trme-Chr990463 | 1 | 225 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme990463g00001 | 36 | 74 | Ion Channels | AT2G26650 | 46.154 | 5.70e-07 | 43.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme990463g00001 | K14508 | - | mof:131167774 | 148.673 |