Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9903g00001 CAGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTGAACAATGTTTTAAGTGCCATTCCTACAGATCTCAACAGAGATGAGTGGGTAAAAGCGTTGCCGAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAACAGAAAGCACAATCATCAGGAACAACTGTAACCCTTGTGATTATAGAAGGATGGGTTATAACAGTTGCATCAGTTGGTGATTCCCGGTGCATACTTGAACCTTCTGAAGGTGGGCTTCATTACTTGTCAGCAGATCATCGACTAGACACAAATGAAGAGGAGAGGGTGCGCATCACTTCTTGTGGGGGTGAAGTCGGTCGGTTAAATACAGGCGGAGGTGCAGAGGTTGGTCCGTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCTCGATCCATTGGCGATATGGATGTTGGCGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAG 501 0.4571 QLFDGHNGSAAAIYAKENLLNNVLSAIPTDLNRDEWVKALPRALVAGFVKTDKDFQQKAQSSGTTVTLVIIEGWVITVASVGDSRCILEPSEGGLHYLSADHRLDTNEEERVRITSCGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9903g00001 167 Gene3D - 1 167 IPR036457 -
Trme9903g00001 167 SUPERFAMILY PP2C-like 2 166 IPR036457 -
Trme9903g00001 167 Pfam Protein phosphatase 2C 2 166 IPR001932 -
Trme9903g00001 167 CDD PP2Cc 2 167 IPR001932 -
Trme9903g00001 167 ProSiteProfiles PPM-type phosphatase domain profile. 1 167 IPR001932 -
Trme9903g00001 167 PANTHER PROTEIN PHOSPHATASE 3 167 IPR015655 GO:0004722|GO:0006470
Trme9903g00001 167 SMART PP2C_4 1 167 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9903g00001 Trme-Chr9903 39 1730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9903g00001 2 167 PP2C-type Phosphatase Gene Family AT1G47380 84.337 1.13e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9903g00001 - - tpra:123914399 338.191