Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9888g00001 TTGGAGGAGTTACCTGAAATCAAGGAGACTATTGAAAATCTAAAAGTGCTCATCTTAGACAAAACAGCAATAAAAGAACTACCTTCATCCTTACACCGTTTGGCCGGGCTTGAAGCATTGAGCTTGCAAAGTTGCACAAAGCTTAAGAATATTCCATCTTCTATTGGAAATCTCAGTAAACTTATCAAGTTAAACCTTGCCAATTGTGTATCACTTGAAACTTTTCCAAGTAGCATTTTCAAATTGAAGTTGACAAGACTCGATTTCAAGGGTTGCTCAATGCTTTGGACCTTTCCAGAAATATCAAATGACATTGGCCGCTTGTCATCCTTGACTGAACTTTCACTGCAAGGAAGCAGTATTGTGAACCTTCCCGAGAGTATGGCTCAGCTGTCAAGTTTGAAATCACTTAATATAAGTGATTGCACATTGCTTGAATGTGTTCCAAAGCTTCCACCAAATCTAAACCAATTTTTGGCATTTGATTGCCCTTCCATTAAGAGAATGGTGCTAAATTCAAGGTCTGCTTCCAAAAAAGGTACCTTCCAATTTCATCTCACCAATAATCAAGAACTAGATGCCACTTCTTGGAGTAATATTGGAGATGAAGCATGTATTAAGATCACCGATGATGCATATAGGTCAGTGTTCTTCTGTTTTTCAGGGAGTGCAGTTCCTTGCTGGTTCCATTACTATTGCAAGGGAAATTCAGTAACTATGAAAAAGGATTCTCCAAATGTATGCAGTAAAAATAGGCTCACTGGTTTTGCTTTGTGTGTTGTTTTGGGACGAGAAGATATGGATGACACGAGAACAGGATATACCAGATTTGCATACAATTTTGGATTTATATCAGATGGTGACATACACTGTTCTTACAATTCTATGCCTGAAAACTATTTGAATTGGAGTTGTCGAGATAGATTTCTCAACCATGATCACACATTCCTATGGAAGCACAGATTTGACTTAGAAAGAATTGGCAACACGCTCTTTCATGCCCAAAACTTCACTTTTGAGATCCTAGTTGATGATTTAGGTCGCTTAAGTTGTGACTCAACAACCACGGTGAAAGAATGTGGAATATGTCCTTTGTATACCAAAGGAAATGATGATGATGATGATGATGATGAGGATGATTAG 1143 0.3797 MEELPEIKETIENLKVLILDKTAIKELPSSLHRLAGLEALSLQSCTKLKNIPSSIGNLSKLIKLNLANCVSLETFPSSIFKLKLTRLDFKGCSMLWTFPEISNDIGRLSSLTELSLQGSSIVNLPESMAQLSSLKSLNISDCTLLECVPKLPPNLNQFLAFDCPSIKRMVLNSRSASKKGTFQFHLTNNQELDATSWSNIGDEACIKITDDAYRSVFFCFSGSAVPCWFHYYCKGNSVTMKKDSPNVCSKNRLTGFALCVVLGREDMDDTRTGYTRFAYNFGFISDGDIHCSYNSMPENYLNWSCRDRFLNHDHTFLWKHRFDLERIGNTLFHAQNFTFEILVDDLGRLSCDSTTTVKECGICPLYTKGNDDDDDDDEDD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9888g00001 380 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 190 - -
Trme9888g00001 380 SUPERFAMILY L domain-like 4 196 - -
Trme9888g00001 380 Pfam C-JID domain 220 368 IPR045344 -
Trme9888g00001 380 Gene3D Ribonuclease Inhibitor 1 206 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9888g00001 Trme-Chr9888 123 1265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9888g00001 10 149 WRKY Transcription Factor Family AT4G12020 33.962 1.01e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9888g00001 - - vvo:131632130 447.588