Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9884g00001 TTTTCTCCAATACCTCCTAAATGGAAAGGTATTTGTGAAAACGGCACCAAATTCTCATCCTCGAACTGTAACAAGAAACTCATTGGTGCAAGATACTATTTCAGAGGGTACGAAAAATTCATCGGAAAAATCAATGAAACAACTGATTATCGTTCCGCTAGAGACTCTCAAGGTCATGGAACACACACTGCCTCGACTGCAGCCGCAATGGACCAAGCAGTTTCTGATGGTGTTGATGTACTTTCACTCTCTTTAGGAAGTATTCCAAAACCATTTTATAATGATAGTATTGCTATAGCTTCATTTGGAGCAACAAAAAACGGCGTTTTTGTTTCTTGCTCCGCAGGCAACTCAGGCCCTTTTGCATCAACAGTTGGAAACGGCTCGCCATGGATCATGACAGTTGCTGCTAGCTACATTGACAGAACTTTTCCAACAAAAGTGAAACTTGGAAACTCAAAAAATTTTGAAGGCACATCTTTGTACCAAGGAAAAAATCAAACAAACCAACAATTTCCACTTGTGTATGGAAAAACAGCAGTTGTTTGTGAAAGAGGAATCAATAGCAGAACAGAAAAAGGAGAAGAAGTGAAAAAATCAGGTGGATATGGAATGATACTACTTAACTCAGAAAATCAAGGTGAAGAGCTTCTTTCTGATGCTCATGTTTTACCAGCTACTTCATTAGGTGCTTCAGCAGGACCAAGTATAATAGGACAAGATGTTATCAAACCAGATATAACTGCACCTGGTGTTAACATCTTAGCTGCATGGCCATCAAACACTAGTCCAACTATGGTCAAAAGTGACAAAAGAAGAGTCCTATTTAACATTGTTTCAGGTACCTCAATGTCTTGTCCTCATGACATGTTAATCCAGAAAGTGCTTCTGATCCTGGATTAG 903 0.392 FSPIPPKWKGICENGTKFSSSNCNKKLIGARYYFRGYEKFIGKINETTDYRSARDSQGHGTHTASTAAAMDQAVSDGVDVLSLSLGSIPKPFYNDSIAIASFGATKNGVFVSCSAGNSGPFASTVGNGSPWIMTVAASYIDRTFPTKVKLGNSKNFEGTSLYQGKNQTNQQFPLVYGKTAVVCERGINSRTEKGEEVKKSGGYGMILLNSENQGEELLSDAHVLPATSLGASAGPSIIGQDVIKPDITAPGVNILAAWPSNTSPTMVKSDKRRVLFNIVSGTSMSCPHDMLIQKVLLILD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9884g00001 300 Pfam Subtilase family 69 288 IPR000209 GO:0006508|GO:0008236
Trme9884g00001 300 Gene3D - 142 179 - -
Trme9884g00001 300 Gene3D - 180 234 - -
Trme9884g00001 300 SUPERFAMILY Subtilisin-like 19 288 IPR036852 GO:0004252|GO:0006508
Trme9884g00001 300 Pfam Subtilase family 35 71 IPR000209 GO:0006508|GO:0008236
Trme9884g00001 300 Gene3D Peptidase S8/S53 domain 1 68 IPR036852 GO:0004252|GO:0006508
Trme9884g00001 300 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 232 288 IPR045051 -
Trme9884g00001 300 CDD PA_subtilisin_like 148 238 - -
Trme9884g00001 300 Gene3D Peptidase S8/S53 domain 69 290 IPR036852 GO:0004252|GO:0006508
Trme9884g00001 300 ProSiteProfiles Serine proteases, subtilase domain profile. 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9884g00001 Trme-Chr9884 3 1370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9884g00001 1 288 Subtilisin-like Serine Gene Family AT1G01900 46.310 5.04e-114 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9884g00001 - - gmx:100790006 402.905