Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9863g00001 ATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCAATNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCTGGCCTTTTAATTGGAAGACCAAATTCAAAATCTATTGGACCTGATGGACAAGTTCTCAATGCTAAAGAGGCTTTTCAACTAGCTGGAATTGAAAGTGATTTTTTTGAGTTGCAAGCTAAAGAAGGTTTAGCACTAGTGAATGGTACTGCTGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGAGACAAATTTACTTSTTGTTCTATCGGAACTTATATCCGCGATTTTCGCTGAAGTTATGCAAGGAAAACCGGAATTCACTGATCATTTGACTCATAAGTTGAAACACCATCCTGGTCAAATTGAGGCCGCGGCTATTATGGAACATATTTTAGATGGAAGTTATTATGTTAAGGCTGCACAAAAATTACATGAGACTAATCCACTTCAGAAGCCTAAACAAGATAGGTATGCGCTTCGAACATCGCCACAGTGGCTTGGACCGCAGATTGAAGTGATTCGACACGCAACAAAGATGATTGAGAGGGAGATAAATTCTGTGAATGACAATCCACTTATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAAGGTACACCGATTGGTGTTTCGATGGACAACACGCGTTTAGCCATCGCTTCGATTGGAAAACTCTTGTTTGCTCAATTCTCTGAGCTTGTGAATGACTTCTATAACAACGGATTGCCTTCGAATCTAACCGCGGGCCGTAATCCGAGTTTGGATTACGGATTCAAAGGAGCAGAAATTGCAATGGCATCTTATTGCTCAGAACTTCAATACCTTGCTAATCCTGTCACCACTCATGTTCAAAGTGCCGAACAACATAACCAAGATGTGAACTCTTTAGGCTTGATTTCATCAAGAAAAACTGCTGAAGCAGTAGAAATATTGAAACTCATGTCATCAACTTTCTTAGTTGCATTGTGCCAAGCAATTGATCTAAGGCACATTGAGGAAAACTTGAAAAGTGCTGTCAAGAACACTGTGAGTCAAGTGGCTAAGAGAGTTCTCACAATTGGTGTAAATGGTGAATTGCATCCATCAAGGTTTAGTGAGAAGCATTTGCTCAATGTTGTTGAAAGTGAGTATGTTTTTGCTTACATTGATGACCCTTGTAATGCTACATACCCTCTAATGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTGCAAAATGGTGATAATGAGGCAAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAACTCAAGACCCTTTTGCCTAAAGAAGTGGAAAGTGCAAGAATTGAAGTTGAAAATGGAAACCCTGCAATTCCTAATAGGATTAAGGAATGTAGGTCTTACCCCTTGTACAAGTTTCTAAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAATTATATCACCTGGTGAGGAATGTGAAAAGGTTTTCTCAGCATTGTGTGATGGAAG 1610 0.3708 MLVRINTLLQGYSGIRFEIMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLLIGRPNSKSIGPDGQVLNAKEAFQLAGIESDFFELQAKEGLALVNGTAVGSGLASLVLFETNLLXVLSELISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKLHETNPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLRHIEENLKSAVKNTVSQVAKRVLTIGVNGELHPSRFSEKHLLNVVESEYVFAYIDDPCNATYPLMQKLRHVLVDHALQNGDNEANSSTSIFQKIGAFEEELKTLLPKEVESARIEVENGNPAIPNRIKECRSYPLYKFLRETLGTSLLTGEKIISPGEECEKVFSALCDG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9863g00001 536 Coils Coil 19 22 - -
Trme9863g00001 536 CDD PAL-HAL 1 367 IPR001106 -
Trme9863g00001 536 Gene3D Fumarase/aspartase (Central domain) 104 536 - -
Trme9863g00001 536 Gene3D - 50 103 IPR024083 -
Trme9863g00001 536 NCBIfam phenylalanine ammonia-lyase 1 536 IPR005922 GO:0005737|GO:0006559|GO:0016841
Trme9863g00001 536 SUPERFAMILY L-aspartase-like 54 536 IPR008948 GO:0003824
Trme9863g00001 536 Pfam Aromatic amino acid lyase 54 380 IPR001106 -
Trme9863g00001 536 FunFam Phenylalanine ammonia-lyase 370 491 - -
Trme9863g00001 536 Gene3D - 370 491 IPR023144 -
Trme9863g00001 536 PANTHER HISTIDINE AMMONIA-LYASE 1 536 IPR001106 -
Trme9863g00001 536 FunFam Phenylalanine ammonia-lyase 104 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9863g00001 Trme-Chr9863 13 1622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9863g00001 1 536 Monolignol Biosynthesis Gene Families AT2G37040 77.799 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9863g00001 K10775 - gmx:100801470 899.042