Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9860g00001 GTTATACAGGCTATTTATTTTGGAGTCCTTTCCATACTTTGCGCAGGTTCGGCAGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGCTATGACCCTGTTCAAAAATAAGGTGGTTGAAAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGAGTTGAAATTCTGTAGTGTCTCCTTTAAGTATAATGATGGTCTGCCTCTTATCTTAAATGAACTGAATCTCCACGTTCGTCCTGGAGAGATAGTTGCTATCGTCGGTCCTTCCGGGGGAGGGAAAACAACACTTGCAAAACTGTTGCTTCGCCTTTATGATCCTATATCTGGGGCTATACTGATTGATAACCAAAACACCCAAAACATTAGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAGTAAGTGATTCAGCACTCAAGCTTCTGTATCCATCTTCTTCTGTATGCAGGATTTGTACGGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGAGTGAAGCAGGTAGCTCAAACTGCTTATGCCGACGAGTTTATCAGAAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGATCAACTTTAAGTGGAGGTCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTAATGGAAAATCGTACG 882 0.407 VIQAIYFGVLSILCAGSAVISRGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTLFKNKVVEKPDAVDLDHVTGELKFCSVSFKYNDGLPLILNELNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGAILIDNQNTQNISLQSLRRHVGVVSQDIVSDSALKLLYPSSSVCRICTVAENIGYRDLTTKIDMERVKQVAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9860g00001 294 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 4 294 IPR039421 -
Trme9860g00001 294 Gene3D - 88 294 IPR027417 -
Trme9860g00001 294 ProSitePatterns ABC transporters family signature. 244 258 IPR017871 GO:0005524|GO:0016887
Trme9860g00001 294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 294 IPR003439 GO:0005524
Trme9860g00001 294 Gene3D ABC transporter type 1, transmembrane domain 5 87 IPR036640 GO:0005524|GO:0016020
Trme9860g00001 294 Pfam ABC transporter 107 272 IPR003439 GO:0005524
Trme9860g00001 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 294 IPR027417 -
Trme9860g00001 294 SMART AAA_5 116 291 IPR003593 GO:0016887
Trme9860g00001 294 SUPERFAMILY ABC transporter transmembrane region 5 68 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9860g00001 Trme-Chr9860 48 1733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9860g00001 81 294 Calmodulin-binding Proteins AT2G36910 43.779 1.64e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9860g00001 K02021 - gmx:100788075 447.588