Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme98523g00001 GGTGACGATCTACTTTGGGCGATGACTACGTTAGGATTTGAAGAGTATGTTGAACCTTTGAAGATTTATCTTCAACGATTCAGAGAGATCGAAGGTGAGAAAACCGTTGCTGCACGTGACAAAGACGTTGCTCCTTCTTCTTCATCATCTTCTGTTTTCGATTACGGTGCTCCTCAGGTTGGAATGATCATGCATCATCAGCAACAACATCAGCATCAGGGACACGTGTACGGTTCTGGTGGTTTTCATCAAGTACCTGGTGGGCCAGGTTATCCTAATGCTGGATCTAATGCGGGTAGACCCAGGTAG 309 0.4595 GDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDVAPSSSSSSVFDYGAPQVGMIMHHQQQHQHQGHVYGSGGFHQVPGGPGYPNAGSNAGRPR 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme98523g00001 102 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 71 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme98523g00001 102 MobiDBLite consensus disorder prediction 65 102 - -
Trme98523g00001 102 SUPERFAMILY Histone-fold 1 68 IPR009072 GO:0046982
Trme98523g00001 102 Gene3D Histone, subunit A 1 75 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme98523g00001 Trme-Chr98523 1 309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme98523g00001 1 38 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.579 2.25e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme98523g00001 K08065 - gmx:100813169 120.938