Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme98426g00001 ATGTCAGCAATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCGATTCATATCGACCCAGAAACGATCAAACCACCAAAGAGAAAGAATGTGAAGATTTCGAAGGATCCACAAAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAGAGAATAAGGATATTGCAAAGATTAGTTCCTGGTGGAACTAAAATGGATACAGCTTCAATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGCAGGGGCAAATAAACCTTTGAATTTTGTTGGATTCCCAGGAGTGGTTTCTACTACTAATGCTAATTTTAATTATTCTTCTAATTTGCTTAGAGGTTGTTCATCATCATCACCTTATCAAATTGTGGGTCCTACTTCCAAAAAAATGCTTATTTAA 432 0.3588 MSAMREMIFRMAVMQPIHIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANKPLNFVGFPGVVSTTNANFNYSSNLLRGCSSSSPYQIVGPTSKKMLI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme98426g00001 143 Coils Coil 73 93 - -
Trme98426g00001 143 Gene3D - 33 100 IPR036638 GO:0046983
Trme98426g00001 143 FunFam BHLH transcription factor 37 100 - -
Trme98426g00001 143 SMART finulus 40 89 IPR011598 GO:0046983
Trme98426g00001 143 Pfam Helix-loop-helix DNA-binding domain 43 83 IPR011598 GO:0046983
Trme98426g00001 143 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Trme98426g00001 143 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 92 IPR036638 GO:0046983
Trme98426g00001 143 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 118 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme98426g00001 Trme-Chr98426 227 658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme98426g00001 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 92.391 4.86e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme98426g00001 HLH 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme98426g00001 - - gmx:100796649 199.519