Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme983740g00001 ATGACTAGTCGTGTAGTAACACTTTGGTATCGGCCTCCTGAGTTGCTTCTTGGTGCCACGGATTATGGTGTGGGTGTAGACCTTTGGAGTGCTGGATGTATTCTAGGAGAGTTACTGGCTGGA 123 0.4878 MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAG 41
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme983740g00001 41 ProSiteProfiles Protein kinase domain profile. 1 41 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme983740g00001 41 PANTHER CELL DIVISION PROTEIN KINASE 1 40 - -
Trme983740g00001 41 Gene3D Transferase(Phosphotransferase) domain 1 1 40 - -
Trme983740g00001 41 Pfam Protein kinase domain 1 41 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme983740g00001 41 SUPERFAMILY Protein kinase-like (PK-like) 1 41 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme983740g00001 Trme-Chr983740 1 123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme983740g00001 1 41 Core Cell Cycle Gene Families AT5G64960 70.732 3.12e-18 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme983740g00001 Pkinase 1.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme983740g00001 K08819 - gmx:100790750 88.9669