Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9808g00001 GGATTCTTCCAATTCCAACCGCGAACTTTAGGCTCGCTTTTCACTTCTAATGGATCAACCAGGCCACACAGAATCTCACACAAGTTCAATGGTTTTCCAGACAACAATTGTCACTCAAATCTCTCTAGCAACATCATTTCAAATGGAACAAATTCACTTGAAGATGCATCTTCTGTTATTGTTGATGCTTCAGATATGTCCGAATCAACAAGTTCATCAAGTCATAGCACAGAAACAAAGCATGAAAGTTTAGTTAATGGAATCAAACAGAACCATGATAATAAGACACATGATAAGTTACAAAATGGTTTTGCAAACTCTAGTCAATGTAAGGATGCAAGTAGAGAAATGAATTTAGAAACAAAATCAAGCGAACCGAAGCAAATATGTCAAGGTCAAGCGAAGGAAGATAGTATTACTAGTACTAGCATATCATCAGAAGTAACCAAATCGACATTAAAGCCGAGTATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAACTAGGATATACCATGGATGTTGTGAATAATGGAGTGGAAGCCATACGCGCAGTTCAAAGTCATTCTTACGACATTATCTTAATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTACGAGGAAACAGGCAACTGGGATGCTGCAAGAGAAGCTGGAGTTGAACACAGTTTATCCGCTTCAGATGAATGTTCTGTACCACCTAAAAAGCGCATCCATATTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCAGAAGAATGTTTCGCCATCGGTATGGACTCATTTGTGTCAAAACCAGTCACATTCCAAAAAATGAAAGAGTGTCTTGAAAAGTATCTAAGGTGA 900 0.3789 GFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDNNCHSNLSSNIISNGTNSLEDASSVIVDASDMSESTSSSSHSTETKHESLVNGIKQNHDNKTHDKLQNGFANSSQCKDASREMNLETKSSEPKQICQGQAKEDSITSTSISSEVTKSTLKPSILLVEDNKINIMVTKSMMKQLGYTMDVVNNGVEAIRAVQSHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAAREAGVEHSLSASDECSVPPKKRIHIVAMTANTMSESAEECFAIGMDSFVSKPVTFQKMKECLEKYLR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9808g00001 299 FunFam Histidine kinase 5 149 299 - -
Trme9808g00001 299 Gene3D - 148 299 - -
Trme9808g00001 299 SMART REC_2 155 294 IPR001789 GO:0000160
Trme9808g00001 299 Pfam Response regulator receiver domain 157 225 IPR001789 GO:0000160
Trme9808g00001 299 ProSiteProfiles Response regulatory domain profile. 156 298 IPR001789 GO:0000160
Trme9808g00001 299 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 82 298 - -
Trme9808g00001 299 SUPERFAMILY CheY-like 155 299 IPR011006 -
Trme9808g00001 299 CDD REC_hyHK_CKI1_RcsC-like 157 294 - -
Trme9808g00001 299 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9808g00001 Trme-Chr9808 2 1196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9808g00001 1 298 Histidine Kinase Gene Family AT5G10720 43.182 5.72e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme9808g00001 Response_reg 2.5e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9808g00001 - - cam:101512841 446.432