Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme98029g00001 GAGCAAGTGGAGGTCTATTCTCATCGTGAAGAACCAGCGGCAACTGAGAACTCTGGTCATGATTCTTTGCGCACCGATCATGTGAATTTGAGGCCATATTTGAACCATGATCAGTATGGAACATGTGTCAGCGAGTTGAGTAGAGTTGCACCCCCGAAGGAATACACTTGTCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATACGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTCATGTTATATGCCCGAAAACTAAAAAGAAACTGCCGCATATGGCGATGACTCCTAACGTTGCTTTAAAGAAAGTAATATCAAACTGGTGCAAAACTAATGGAGTCTCGATCCCTAACCCAAGTAGGCAGGCAGAAGACATTCGCTTGTGGGAAGATTCCATCGCTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATCTTAGTAACATTTCACTTGGATCGTTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAGGGCTAGTCATGGCTTAAAT 561 0.4225 EQVEVYSHREEPAATENSGHDSLRTDHVNLRPYLNHDQYGTCVSELSRVAPPKEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGHVICPKTKKKLPHMAMTPNVALKKVISNWCKTNGVSIPNPSRQAEDIRLWEDSIASIRSFGSSMNGLNLPMDLSNISLGSLDNSYNSDSSLVRASHGLN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme98029g00001 187 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Trme98029g00001 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 125 IPR013083 -
Trme98029g00001 187 Pfam U-box domain 52 121 IPR003613 GO:0004842|GO:0016567
Trme98029g00001 187 FunFam RING-type E3 ubiquitin transferase 50 122 - -
Trme98029g00001 187 CDD RING-Ubox_PUB 52 101 IPR045210 -
Trme98029g00001 187 MobiDBLite consensus disorder prediction 1 25 - -
Trme98029g00001 187 SUPERFAMILY RING/U-box 47 127 - -
Trme98029g00001 187 PANTHER U BOX DOMAIN-CONTAINING 33 130 - -
Trme98029g00001 187 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme98029g00001 Trme-Chr98029 1 561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme98029g00001 51 166 U-box Gene Family AT1G24330 46.218 2.37e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme98029g00001 - - gmx:100798951 263.077