Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9789g00001 ATGGGAGTAATACATAACAATGTTGTTTGTGACCAAAGGAAAAGGTTTGCACTTCTTGGTATATCTTCCATACTTTTTGTCGCTATGATCGGTACGGTCGCTGGACAACAAAATAGCGTAGAAATGCTTTGTCAATCAACACAATACCAAGAAACATGTCACAAGAGTCTCGAAAAAGCACCGAGCGATACAACCGATATGAAAGCGCTTCTTAAAGCTGCATTCAATGCAACCATTGACGAGTTATCGAAGCATATCAACAATACATCTCTTTATCAAGAATTGGCAAAAGATAACATGACAAAACAAGCAATTGAAGTTTGTAATGAAGTGTTGGATTATGCTGTTGATGGAATGCATAAATCTGTTGGTACATTAGATAAATTTGATGTCAATAAGGTAAATGAATATGCTTATGATCTCAAAGTTTGGTTAACTGGTACACTTTCACATCAACAAACATGTTTAGATGGTTTCGAGAATTCGAAAACAAAAGCCGGCGAAACAATGGCTAAGGTTTTGAACACTTCTATGGCATTAAGTAGTAATGCTATTGACATGCTTAGTGCTGTTTCTGGCTTACTTAATAATTTTAATACAAACACACACAATAGGAAACTTTTGTCACTTGTCGATGGTTATCCTTCGTGGGTTAGCGAAGGACAACGACGTCTTCTTGCCGATGCTAATGTTAAACCTAATGCTGTTGTGGCTCAAGATGGTAGTGGACAGTTTAAGACATTAANNNNNNNNNNANNNACTGTTCCTGCTAATAATGCACAACCTTTTGTGATTCATGTTAAGGAAGGTGTTTATAAGGAGACTGTTAATGTGGCTAAGGAAATGACTTATGTTACTATCATTGGTGATGGTCCTACAAAGACTAAATTCACTGGTAGCCTTAACTTTGCTGATGGTTTACTACCTTACAACACCGCAACCTTCG 946 0.3658 MGVIHNNVVCDQRKRFALLGISSILFVAMIGTVAGQQNSVEMLCQSTQYQETCHKSLEKAPSDTTDMKALLKAAFNATIDELSKHINNTSLYQELAKDNMTKQAIEVCNEVLDYAVDGMHKSVGTLDKFDVNKVNEYAYDLKVWLTGTLSHQQTCLDGFENSKTKAGETMAKVLNTSMALSSNAIDMLSAVSGLLNNFNTNTHNRKLLSLVDGYPSWVSEGQRRLLADANVKPNAVVAQDGSGQFKTLXXXXXTVPANNAQPFVIHVKEGVYKETVNVAKEMTYVTIIGDGPTKTKFTGSLNFADGLLPYNTATF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9789g00001 315 Pfam Pectinesterase 234 315 IPR000070 GO:0030599|GO:0042545
Trme9789g00001 315 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 190 IPR035513 -
Trme9789g00001 315 PANTHER PECTINESTERASE 23 315 - -
Trme9789g00001 315 Pfam Plant invertase/pectin methylesterase inhibitor 39 187 IPR006501 GO:0004857
Trme9789g00001 315 CDD PMEI-like_3 43 193 - -
Trme9789g00001 315 FunFam Pectinesterase 36 192 - -
Trme9789g00001 315 NCBIfam pectinesterase inhibitor domain 16 187 IPR006501 GO:0004857
Trme9789g00001 315 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 205 IPR035513 -
Trme9789g00001 315 SUPERFAMILY Pectin lyase-like 232 315 IPR011050 -
Trme9789g00001 315 Gene3D - 228 315 IPR012334 -
Trme9789g00001 315 SMART PMEI_2 35 187 IPR006501 GO:0004857
Trme9789g00001 315 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9789g00001 Trme-Chr9789 703 1648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9789g00001 39 314 Carbohydrate Esterase AT5G49180 44.599 1.82e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9789g00001 K01051 - gmx:100784682 393.66