Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme97821g00001 ATGAAGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACCAAGATGATGAAGCTGAGGTATTTGGCTCCAGAGTATTTCATGCATGGACTTGTGGATGAGAAGACTGATGTATTTGCATTTGGAGTATTGTTACTTGAGCTCATCACAGGTCGTCGCGCAGTCGATTCAAATAGCAGGCAAAGTCTTGTGATTTGG 219 0.411 MKIVQEESFTETSKPQTYYSTKMMKLRYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRQSLVIW 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme97821g00001 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme97821g00001 73 Pfam Protein tyrosine and serine/threonine kinase 19 64 IPR001245 GO:0004672|GO:0006468
Trme97821g00001 73 PANTHER OS08G0249100 PROTEIN 28 73 IPR046958 -
Trme97821g00001 73 Gene3D Transferase(Phosphotransferase) domain 1 2 73 - -
Trme97821g00001 73 SUPERFAMILY Protein kinase-like (PK-like) 16 71 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme97821g00001 Trme-Chr97821 121 631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme97821g00001 9 73 Trihelix Transcription Factor Family AT4G32710 47.826 1.98e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme97821g00001 PK_Tyr_Ser-Thr 2.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme97821g00001 - - lja:Lj0g3v0135119.1 95.1301