Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme977253g00001 ATGGCTAAGGTTTCAGATTTCGGATTGGCGAAGCTAATGAGCAGAGAACAAAGCCATGTTTTCACGACTCTTAGAGGAACAAGAGGTTATTTAGCACCAGAATGGATAACTAACTATGCGATTTCGGAGAAGAGTGATGTGTTTAGCTATGGAATGCTTTTGCTTGAGATTATTGGTGGAAGGAAAAACTATGAT 195 0.3949 MAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYD 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme977253g00001 65 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 65 - -
Trme977253g00001 65 Gene3D Transferase(Phosphotransferase) domain 1 1 65 - -
Trme977253g00001 65 SUPERFAMILY Protein kinase-like (PK-like) 2 64 IPR011009 -
Trme977253g00001 65 ProSiteProfiles Protein kinase domain profile. 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme977253g00001 65 Pfam Protein kinase domain 2 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme977253g00001 Trme-Chr977253 1 195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme977253g00001 2 63 Receptor kinase-like Gene Family AT5G20050 64.516 5.82e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme977253g00001 Pkinase 3.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme977253g00001 - - psat:127087581 132.88