Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme97532g00001 GTGGCAAAGCTAAATGCAAATGAATGGTATTTCTTTAGCTTTAGGGACCGTAAATATGCAACTGGATTTAGAACAAATAGAGCAACTATATCTGGGTATTGGAAAGCAACTGGGAAAGATCGAACGGTGTTAGATCCAATCACACAAGAGGTTGTAGGAATGAGGAAGACATTGGTGTTCTATAAGAATAGAGCTCCAAATGGTATCAAAACAGGATGGATTATGCATGAATTTCGTTTGGAGACACCACATATGCCTCCTAAGGTTAGTTAA 273 0.3846 VAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDPITQEVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKVS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme97532g00001 90 Pfam No apical meristem (NAM) protein 4 80 IPR003441 GO:0003677|GO:0006355
Trme97532g00001 90 Gene3D NAC domain 1 89 IPR036093 GO:0003677|GO:0006355
Trme97532g00001 90 SUPERFAMILY NAC domain 3 85 IPR036093 GO:0003677|GO:0006355
Trme97532g00001 90 ProSiteProfiles NAC domain profile. 1 90 IPR003441 GO:0003677|GO:0006355
Trme97532g00001 90 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme97532g00001 Trme-Chr97532 196 468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme97532g00001 1 90 NAC Transcription Factor Family AT1G56010 64.444 8.33e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme97532g00001 NAM 1.6e-19 No_clan