Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme97493g00001 TCTCCTGGGGCTACTCCTAAGTTTACCGACACAGCTGCCAATTTTACATCAGAAAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCTACAGATGAATTCCGTATGTTTTCGTTCAAGGTTCGTCCTTGTTCTCGGGCATACTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTGCACCCAGCTCAGTATAGGACAAGGCTCTGCAAAGATGGTACTAGTTGTAACCGAAGGGTGTGCTTTTTTGCTCACATAGCTGAAGAGCTTCGTCCGTTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCTCGATCAGCTGCTTCTGCTGCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTTTTCCTAGTTCACCATCATCAATCTCGTCCATGTCTCCATCTCCCTTTGCACAGCCATTATCTCCATCTGCTAATGGCATCTCTCACTCAAATAATGCTTGGCCACAGCCAAATGTGCCTGCTCTTCATTTACCAGGAAGCAATGTTCAAACTAGTCGTTTGAGATCTTCTCTTAGTGCCCG 701 0.4565 SPGATPKFTDTAANFTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIAEELRPLYVSTGSAVPSPRSAASAANVMDMAAAMSLFPSSPSSISSMSPSPFAQPLSPSANGISHSNNAWPQPNVPALHLPGSNVQTSRLRSSLSAR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme97493g00001 234 MobiDBLite consensus disorder prediction 185 234 - -
Trme97493g00001 234 Pfam CCCH-type zinc finger 85 105 IPR041367 -
Trme97493g00001 234 Gene3D - 80 143 - -
Trme97493g00001 234 PANTHER UNKEMPT FAMILY MEMBER 21 214 IPR045234 -
Trme97493g00001 234 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Trme97493g00001 234 SMART c3hfinal6 115 138 IPR000571 GO:0046872
Trme97493g00001 234 ProSiteProfiles Zinc finger C3H1-type profile. 85 107 IPR000571 GO:0046872
Trme97493g00001 234 FunFam Zinc finger CCCH domain-containing protein 66 38 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme97493g00001 Trme-Chr97493 1 701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme97493g00001 11 234 C2H2 Transcription Factor Family AT5G12850 73.894 3.92e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme97493g00001 zf-CCCH 1.8e-05 CL0537