Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme97457g00001 ATGAATTGCTATGAGGAGGACCGGACTATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATCGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAACTCTACTTTGAGGCGTCGGGGAATTGACCAGATTAGGTTAGAATCTGGTATCATGGTAGAAGCGAAAGCATCATCAGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGCTCTATGGAGATTGTGGCCGATAAATATGAAGGCAATGCAAGGACTGATGCTCAACTATACCATGAAGTCAGGGATCCTCCGACCCTTTTTAAGCCTGTAGCACGTGTAAGTGCTTTTAACGTGTACAACACTTTCAATGGTTCACAGCCTTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATCCGCCAAAATCAGATGCGGAAATTTGTAAAATGCTCAACA 499 0.4309 MNCYEEDRTIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIDQIRLESGIMVEAKASSEETLSCGDVNSLKSSEGRDVSSMEIVADKYEGNARTDAQLYHEVRDPPTLFKPVARVSAFNVYNTFNGSQPSTSVPRPVPMQGPILHPPKSDAEICKMLN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme97457g00001 166 Gene3D - 4 47 - -
Trme97457g00001 166 ProSiteProfiles Myb-like domain profile. 5 44 IPR001005 -
Trme97457g00001 166 SUPERFAMILY Homeodomain-like 5 46 IPR009057 -
Trme97457g00001 166 CDD SANT 5 44 IPR001005 -
Trme97457g00001 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 48 IPR017930 -
Trme97457g00001 166 PANTHER MYB PROTEIN-RELATED 5 86 - -
Trme97457g00001 166 SMART sant 5 46 IPR001005 -
Trme97457g00001 166 Pfam Myb-like DNA-binding domain 5 43 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme97457g00001 Trme-Chr97457 1 665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme97457g00001 6 165 MYB Transcription Factor Family AT3G09230 43.503 1.74e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme97457g00001 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme97457g00001 K09422 - gmx:100813406 239.195