Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9742g00001 AATGTTTACCATTGTCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGCATTGATTACTTTCATTGTATGAAATGCAATTGTTGCGTGGGTATTAAATCAGTGTCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTGTTCACATCAAGTGCAACAGTCAGAGCTCTAGCTTGTGGGCATTACATGCATTCATCTTGTTTTCAGGCATACACTTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCATTGTTGGCTGCTGAGCAGCTTCCTGAAGAGTACAGGGACCGCTCTCAGGGGAATAAATATGCTGAGTAG 387 0.4419 NVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRSQGNKYAE 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9742g00001 128 ProSiteProfiles Zinc finger CTCHY-type profile. 1 48 IPR017921 -
Trme9742g00001 128 ProSiteProfiles Zinc finger RING-type profile. 49 91 IPR001841 -
Trme9742g00001 128 FunFam Zinc finger protein-related isoform 1 44 93 - -
Trme9742g00001 128 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 121 - -
Trme9742g00001 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 93 IPR013083 -
Trme9742g00001 128 SMART ring_2 49 90 IPR001841 -
Trme9742g00001 128 Pfam Ring finger domain 48 90 IPR001841 -
Trme9742g00001 128 SUPERFAMILY Zinc hairpin stack 1 42 IPR037275 -
Trme9742g00001 128 SUPERFAMILY RING/U-box 47 95 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9742g00001 2 122 C2H2 Transcription Factor Family AT3G18290 82.645 2.14e-69 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9742g00001 K16276 - gmx:100791354 265.388