Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96818g00001 ATGACATCTAATGCAGGATCAAAAACATCTAGCGGAGGAAAACCTCTTCACTGGACATCGTGTCTTAAAATTGCAGAAGATCTAGCAACAGGCCTTCTCTATATCCACCAAAACCCCGGCATGACTCACGGAAACCTGAAATCTTCTAATGTGTTACTTGGTTCCGACTTCGAGTCATGTCTCACCGATTACGGTCTCACTGTGTTCCTCAATCCCGACACAATGGAAGAACCAAGTGCCACTTCTTTTTTCTATAGAGCGCCC 264 0.4508 MTSNAGSKTSSGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDTMEEPSATSFFYRAP 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96818g00001 88 ProSiteProfiles Protein kinase domain profile. 1 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme96818g00001 88 SUPERFAMILY Protein kinase-like (PK-like) 11 88 IPR011009 -
Trme96818g00001 88 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 88 IPR046959 -
Trme96818g00001 88 Gene3D Transferase(Phosphotransferase) domain 1 6 88 - -
Trme96818g00001 88 Pfam Protein kinase domain 20 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96818g00001 Trme-Chr96818 1 264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96818g00001 6 88 Receptor kinase-like Gene Family AT1G60630 75.904 3.64e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme96818g00001 Pkinase 7.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96818g00001 - - lja:Lj3g3v3500180.1 169.474