Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9670g00001 GCAATGGTGGATAATGTTTTTCCCTCTTTTCAGGTTCCTAAAGTTGATAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATTAATGATCTAGCACTGATCACTGGACAGAGACCTGTTAAGACTCGGGCGAGGAATTCTGTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGGCTTCCTAGGACAAGAGATTTTCAAGGTTTGAGTATCAGCAGCTTTGATGGGAACGGGAATTTCAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTTTTGGTACACCTAGAGGAATGGATGTCTGCATCTCAACAACTGCTAAAACTGATCAAGAAGGACAAAAATTATTGGCTCTTATGGGCATGCCCTTCAGAGAGGGAGTTGAAAATACCCAAATAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATGCAAAATCAAAGGGTAGAGGAGATAGAGCAAGGAAGTAA 582 0.4158 AMVDNVFPSFQVPKVDKIVVNCGIGEAAQNAKGLDAAINDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLSISSFDGNGNFNIGIKDQTVFPELKSGFGTPRGMDVCISTTAKTDQEGQKLLALMGMPFREGVENTQIVRKKKLKSHHFDAKSKGRGDRARK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9670g00001 193 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 10 166 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trme9670g00001 193 Gene3D - 6 162 IPR022803 -
Trme9670g00001 193 ProSitePatterns Ribosomal protein L5 signature. 41 57 IPR020929 GO:0003735|GO:0005840|GO:0006412
Trme9670g00001 193 Pfam ribosomal L5P family C-terminus 68 160 IPR031309 -
Trme9670g00001 193 Hamap 50S ribosomal protein L5 [rplE]. 3 162 IPR020930 GO:0003735|GO:0005840|GO:0006412
Trme9670g00001 193 Pfam Ribosomal protein L5 11 64 IPR031310 -
Trme9670g00001 193 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 5 169 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trme9670g00001 193 FunFam 50S ribosomal protein L5 3 162 - -
Trme9670g00001 193 SUPERFAMILY RL5-like 9 161 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9670g00001 Trme-Chr9670 3 1402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9670g00001 14 119 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 31.132 2.14e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9670g00001 K02931 - pvy:116112842 291.582