Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9667g00001 GATGCTAACAACGGCGGTGCATTCTCCGTACCTAGCAAATGCGCCAAATTGATCTTCCCACCACTTGATTTGGAAGCCAAATTGCCGACTCAGGAACTCTCCATCACCGATCTTCACGGTAATGTTTGGGAGTTTCGCCATGTCTACCGTGGAAATCCAAAGCGACACATGTTCACCCATAACTGGAGTCAATTTGTTGACCAGAAGAAACTCGTAGGTGGCGATTCCCTTATTTTTATGAAAAATTCGGCCGGAGAGATCTATGTTAGAATTCATCGGGTCAAAAAGTTTGCTACTCCCGCTGTTTTGCAAAAGAATGAATTGGTGGTTATGGAGGCAGTGAAATTGGCGGAAAAGAACGAGGCGTTTGAAGTTGTGTACTATCCGACCGCCGGTGATAATTTTGTGGTGGATGCTAAGGTTGTGGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAACGCTCTTTGAATAATGATGATTCTTCAATATCTTTGCAGCATGGGACAATCACTAATCTTTGTGCTCCTTCTAATCGTCCATGGCACATGCTTCAGGTTAAATGGGATGAAGGTAAAGTATCGGAAAATACAATACAAGTCAATCCTTGGCAGATTGAATATAATTTTGTCGTACCTACATTGCATCTACAATGTCCCCCAACAAAAAAGCTTAAAGTTGCTGAAGATTCTGCTTTATTAAGTGATATACAAGGAGACTCCTCCATTCCAATGATAGAGTTCCAACATTCAGCAATGGAAAAGTTTGTCGATGCCAACAACTGTGACACTAAAAATGTTACTCGTTCATTCAAGCTATTTGGTACTATCATACAAGTTGGAAATGATTTGCCTAATTCTGAAATCAAGGAAGATGATAGTTGTTAG 897 0.4058 DANNGGAFSVPSKCAKLIFPPLDLEAKLPTQELSITDLHGNVWEFRHVYRGNPKRHMFTHNWSQFVDQKKLVGGDSLIFMKNSAGEIYVRIHRVKKFATPAVLQKNELVVMEAVKLAEKNEAFEVVYYPTAGDNFVVDAKVVEDAMKINWNCGMRVKRSLNNDDSSISLQHGTITNLCAPSNRPWHMLQVKWDEGKVSENTIQVNPWQIEYNFVVPTLHLQCPPTKKLKVAEDSALLSDIQGDSSIPMIEFQHSAMEKFVDANNCDTKNVTRSFKLFGTIIQVGNDLPNSEIKEDDSC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9667g00001 298 Pfam B3 DNA binding domain 3 93 IPR003340 GO:0003677
Trme9667g00001 298 CDD B3_DNA 1 93 IPR003340 GO:0003677
Trme9667g00001 298 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 237 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme9667g00001 298 Pfam Auxin response factor 113 186 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme9667g00001 298 Gene3D - 149 214 - -
Trme9667g00001 298 SMART B3_2 8 95 IPR003340 GO:0003677
Trme9667g00001 298 Gene3D - 1 94 IPR015300 -
Trme9667g00001 298 SUPERFAMILY DNA-binding pseudobarrel domain 2 95 IPR015300 -
Trme9667g00001 298 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9667g00001 Trme-Chr9667 341 1743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9667g00001 1 255 B3 DNA Binding Superfamily AT1G77850 35.690 1.86e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme9667g00001 B3 9.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9667g00001 - - mtr:11413246 280.796