Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96659g00001 ATGAATGATCGGCGTGGTCCTCCCCCAGCTGCACGATCTGCAATTGATGCAATGCCTACTATTAGGATCACACAGGTGCATCTTCGCTCCGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGATCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTGAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGCTGCCACCACACGGACAAGTTAGTTCTCGTGCAAGTAGTCGAAGCAACAACGGTGGAAATGGTAGCTCAAGAGGCAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCATTCCGTTCTTCTAGTTCAAACAATAATCAATATTCTGAGACTGGAGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATCATGGATGGCACTACGATAACTAA 480 0.45 MNDRRGPPPAARSAIDAMPTIRITQVHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPHGQVSSRASSRSNNGGNGSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTSYHGWHYDN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96659g00001 159 MobiDBLite consensus disorder prediction 83 104 - -
Trme96659g00001 159 FunFam E3 ubiquitin-protein ligase RING1-like 1 81 - -
Trme96659g00001 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 79 - -
Trme96659g00001 159 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Trme96659g00001 159 SMART ring_2 34 74 IPR001841 -
Trme96659g00001 159 MobiDBLite consensus disorder prediction 119 159 - -
Trme96659g00001 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Trme96659g00001 159 SUPERFAMILY RING/U-box 14 81 - -
Trme96659g00001 159 Pfam Ring finger domain 33 75 IPR001841 -
Trme96659g00001 159 MobiDBLite consensus disorder prediction 76 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96659g00001 Trme-Chr96659 19 498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96659g00001 6 123 C3H Transcription Factor Family AT1G68180 43.220 3.80e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96659g00001 K11982 - gmx:100813674 265.388