Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9659g00001 GGAGCTTTGCCACCTAGGGTTTATGTTGGTCATTCCATTTATAAAGGGAAGGCTGCTCTCACTATCACTCCAAGACCACCGGAATTCGCGCCTTTGGATTACAAAGTGATGTCAGATTGTGGATACAGTGGTTGCTATAGCTCTGTAGGGGCATATAAGATAACTAGGGATGGTTACGTGCTGCTTCAGTTTGCGCCCTCTCTTGGACCGCGACAATATGATTGGAATAGTAAACAGGTGTTCTCGTTATCTGTGGCTGAAATGGGAAGTGTGATTAGCCTTGGTGGAAGGGAGACCTGTGAATTTTTTCATGATCCTTTTATGGGAAAAAGTGATGAAGGCAAAGTCAGAAAGGTTTTGAAGGTTGAGCCTTTCCCGGATGGTTCTGGTTTCTTCTTTAACCTCAGTAATTCTCTTTCTTCATGA 426 0.439 GALPPRVYVGHSIYKGKAALTITPRPPEFAPLDYKVMSDCGYSGCYSSVGAYKITRDGYVLLQFAPSLGPRQYDWNSKQVFSLSVAEMGSVISLGGRETCEFFHDPFMGKSDEGKVRKVLKVEPFPDGSGFFFNLSNSLSS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9659g00001 141 Gene3D Transcriptional Coactivator Pc4; Chain A 2 141 IPR009044 GO:0003677|GO:0006355
Trme9659g00001 141 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 4 136 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trme9659g00001 141 SUPERFAMILY ssDNA-binding transcriptional regulator domain 5 137 IPR009044 GO:0003677|GO:0006355
Trme9659g00001 141 Pfam Whirly transcription factor 49 137 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9659g00001 3 136 Whirly Transcription Factor Family AT1G14410 67.910 2.15e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trme9659g00001 Whirly 8e-39 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9659g00001 K26559 - gmx:100804480 189.119