Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9657g00001 CTTCATCATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTATCAACCATTCTCCAAAACCAATCAACAAGATGGATCAATTCACCTTCTATCAACTACATCACTTACTCAACCCAATCATCTTTCACCACCTGGACCAATCACAACTTCCACACGCCGCCGCCGGACACCACCGCCTCACAATGGCTCCTCAAATACATCCTTTTCACAGTCCCATTCCTTCACACCAAAAACCACGACGAAACNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGGCTACGCGGTAAAGGAGGACCGCAAGACGAGCTCAGCGCGAACCATGTTCTCGCTGAGCGAAGACGAAGAGAGAAACTCAATGAGAGGTTCATCATTTTAAGATCGTTGGTTCCATTCGTTACGAAGATGGATAAAGCTTCTATATTAGGTGATACAATCGAGTACTTGAAACAGCTTCGGAGAAAGATTCAAGATCTCGAGACGCGTAACCGTCAGATAGAATCTGAGAGGAGTGGCGGAACCGTTGTGGTTGGTCCCACTGAGAAGAAAAAAGTGAGGATTGTGGAAGGGGGTAGTGGGGCTAATAGAGCGAAAGCGGTTGAGGTTGTTGAGAAGGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATAGAATGTTTACACAGAGAAGGGTTGTTGTTGGATGTTATGCAGATGTTAAGGGAGTTGAGGATTGAGGTTATTGGGGTTCAGTCTTCGCTTAACAATGGTGTTTTTGTCGCGGAATTGAGGGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAACATTTAG 921 0.4191 LHHPLEDLTQEDTHYSQTVSTILQNQSTRWINSPSINYITYSTQSSFTTWTNHNFHTPPPDTTASQWLLKYILFTVPFLHTKNHDETXXXXXXXXXXXXXXXXXXLRGKGGPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERSGGTVVVGPTEKKKVRIVEGGSGANRAKAVEVVEKEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQLIPHNI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9657g00001 306 PANTHER TRANSCRIPTION FACTOR TT8 9 304 - -
Trme9657g00001 306 Gene3D - 115 184 IPR036638 GO:0046983
Trme9657g00001 306 Pfam Helix-loop-helix DNA-binding domain 118 165 IPR011598 GO:0046983
Trme9657g00001 306 Coils Coil 154 181 - -
Trme9657g00001 306 SMART finulus 121 170 IPR011598 GO:0046983
Trme9657g00001 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Trme9657g00001 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 182 IPR036638 GO:0046983
Trme9657g00001 306 Coils Coil 106 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9657g00001 Trme-Chr9657 770 1690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9657g00001 2 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.523 1.41e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme9657g00001 HLH 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9657g00001 - - cam:101506726 412.149