Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96571g00001 AGATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTGGATGAGACTGCTCAGACTATTGACAAAAATGGATGGCTTCACACTGGTGACATTGGATTCATAGATGATGAAGAAAATGTTTTTATTGTTGATCGTATTAAGGAGTTGATTAAATATAAAGGCTTTCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATTCTTCAGTTGAAGATGCAGCTGTTGTACCGTAA 279 0.3943 RSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVP 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96571g00001 92 Pfam AMP-binding enzyme 2 65 IPR000873 -
Trme96571g00001 92 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 92 - -
Trme96571g00001 92 SUPERFAMILY Acetyl-CoA synthetase-like 2 92 - -
Trme96571g00001 92 Gene3D - 1 60 IPR042099 -
Trme96571g00001 92 Gene3D - 61 92 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96571g00001 Trme-Chr96571 141 699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96571g00001 1 92 Monolignol Biosynthesis Gene Families AT1G62940 79.348 1.59e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96571g00001 K01904 - gmx:100814237 186.808