Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96512g00001 ATGTTTGATGGTGGACCGGAAAATGAGACTGATAAGCTGTTATTAGTTGCCAAAAAGATTAGGAGGGCAACTGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGATCCAGCAATACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATATATGACAGCCAACCTCCACACGGAGCTGGAATTCCACCAAAAAGTACTAGGTCTAGTAGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATATCGTTAGCACCATTACCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCATCATGAACTC 362 0.4199 MFDGGPENETDKLLLVAKKIRRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAGIPPKSTRSSRRFHSKQVSPRVPACNYIVSTITYELNVLRTRGPRRMNCIMNS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96512g00001 121 PRINTS Tubby superfamily signature 28 44 IPR000007 -
Trme96512g00001 121 PRINTS Tubby superfamily signature 94 121 IPR000007 -
Trme96512g00001 121 PRINTS Tubby superfamily signature 44 68 IPR000007 -
Trme96512g00001 121 PANTHER TUBBY-RELATED 7 120 - -
Trme96512g00001 121 MobiDBLite consensus disorder prediction 63 85 - -
Trme96512g00001 121 Pfam Tub family 8 121 IPR000007 -
Trme96512g00001 121 Gene3D Tubby Protein; Chain A 4 121 IPR025659 -
Trme96512g00001 121 SUPERFAMILY Tubby C-terminal domain-like 7 121 IPR025659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96512g00001 7 121 TUB Transcription Factor Family AT2G18280 62.609 1.00e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme96512g00001 Tub 9.1e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96512g00001 K19600 - gmx:100778290 205.297