Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96484g00001 ATGGGACGACACTTGCGGGTGAACTTCTCGGACAAACCGAAACCAAAAGAATCATTGTACCCTGAAACTGAGTACAAGCTTTTTGTTGGGAACTTGTCTTGGAATGTAACTTCTGAGATTCTTACACAAGCCTTTCAAGAACATGGAACTGTGGTTGGAGCTAGGGTGTTATATGATGGCGAAACTGGAAGGTCCCGTGGTTATGGCTTTGTATCCTATGCCAATAAATCAGAAATGGAAGCTGCCCTTACAGTCATGGATAATGTG 267 0.4345 MGRHLRVNFSDKPKPKESLYPETEYKLFVGNLSWNVTSEILTQAFQEHGTVVGARVLYDGETGRSRGYGFVSYANKSEMEAALTVMDNV 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96484g00001 89 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 89 IPR000504 GO:0003723
Trme96484g00001 89 SUPERFAMILY RNA-binding domain, RBD 10 88 IPR035979 GO:0003676
Trme96484g00001 89 PANTHER OS02G0815200 PROTEIN 2 88 - -
Trme96484g00001 89 SMART rrm1_1 26 88 IPR000504 GO:0003723
Trme96484g00001 89 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 87 IPR000504 GO:0003723
Trme96484g00001 89 Gene3D - 10 89 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96484g00001 Trme-Chr96484 90 356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96484g00001 27 89 Eukaryotic Initiation Factors Gene Family AT4G34110 41.270 1.95e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96484g00001 - - csv:101203203 153.295