Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96456g00001 ATGATTTTGTTGCAATGTGTCGATGCAGCTCTTGCGGGGGAGCTTTGTCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCGCCGGGGCAAGAGAGAGAAGCAAGGGGAGGGAGACCAAATAGAACAACTGCTTGTGGGTATTGGAAAGCTACTGGTTCACCTGGTTATGTTTATTCTTCGGATAATAAAGTTATTGGGGTGAAGAAAACTATGGTTTTTTATAAAGGGAAAGCACCTAGTGGAAAGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCAAGTTTCTAACCAATCAAACACTGCCACACCTCAG 318 0.4182 MILLQCVDAALAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGKKTKWKMNEYRAIQVSNQSNTATPQ 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96456g00001 106 Pfam No apical meristem (NAM) protein 16 92 IPR003441 GO:0003677|GO:0006355
Trme96456g00001 106 Gene3D NAC domain 3 106 IPR036093 GO:0003677|GO:0006355
Trme96456g00001 106 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 93 - -
Trme96456g00001 106 SUPERFAMILY NAC domain 14 95 IPR036093 GO:0003677|GO:0006355
Trme96456g00001 106 ProSiteProfiles NAC domain profile. 1 106 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96456g00001 Trme-Chr96456 64 381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96456g00001 11 101 NAC Transcription Factor Family AT3G44350 73.626 1.45e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme96456g00001 NAM 5.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96456g00001 - - cam:101497878 197.978