Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme963811g00001 ATGTACCGTGGCGTTCGTCAGAGACCTTGGGGACGGTGGACAGCTGAGATCTGTGACCCGAACCAAAGAAAACGGGTCTGGTTAGGAACTTTTAACACGGCGGAGGAAGCCGCCGCTAAATACGACGAAGCCGCCGTGAAATTTAAAGGTTCAAAGGCCGTTACTAACTTTCCAAACCGCCCCGCCGTTAAGGATGTTA 199 0.5226 MYRGVRQRPWGRWTAEICDPNQRKRVWLGTFNTAEEAAAKYDEAAVKFKGSKAVTNFPNRPAVKDV 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme963811g00001 66 SMART rav1_2 1 64 IPR001471 GO:0003700|GO:0006355
Trme963811g00001 66 FunFam Ethylene-responsive transcription factor 2 1 59 - -
Trme963811g00001 66 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Trme963811g00001 66 PRINTS Ethylene responsive element binding protein signature 24 40 IPR001471 GO:0003700|GO:0006355
Trme963811g00001 66 SUPERFAMILY DNA-binding domain 2 59 IPR016177 GO:0003677
Trme963811g00001 66 Pfam AP2 domain 2 50 IPR001471 GO:0003700|GO:0006355
Trme963811g00001 66 PANTHER DNA-BINDING DOMAIN 2 59 IPR044808 GO:0003700|GO:0009873
Trme963811g00001 66 ProSiteProfiles AP2/ERF domain profile. 1 58 IPR001471 GO:0003700|GO:0006355
Trme963811g00001 66 Gene3D AP2/ERF domain 1 60 IPR036955 GO:0003700|GO:0006355
Trme963811g00001 66 CDD AP2 2 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme963811g00001 Trme-Chr963811 11 209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme963811g00001 2 60 AP2-EREBP Transcription Factor Family AT5G13330 72.881 2.72e-26 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme963811g00001 AP2 3.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme963811g00001 - K13434 cpap:110823790 102.064