Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96285g00001 ATGGATGAGCAGCTTTTGGATGCAGTATGTGACTGTCTCAAACCAGTACTTTACACGAAAGAAAGCTGCATCGTCCGCGAAGGCGATCCTGTTGATGAGATGCTCTTCATAATGCGTGGCAAACTATTGACCGTGACAACTAACGGTGGAAGAACAGGTTTCTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNACATGGGCATTAGATCCCCGTTCCTCATCCAACCTTCCCATCTCAACCAGGACCGTCCAAACTCTTTCAGAAGTGGAAGCATTTGCTCTAAAAGCTGAGGATTTGAAGTTTGTTGCATCTCAATTTCGGCGCCTTCACAGTAAGCAGCTTCGCCACACTTTCAGGTTTTACTCGCAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCATGGAGGCGCTATTGTAAAAAGAAGCTTGAAGAGTCTCTAAGGGAAGAGGAGAATAGGTTGCAAGATGCATTGGCCAAGGAAGGTGGTAGCTCACCTAGCCTAGGCGCTACAATATATGCTTCGAGATTTGCTGCTAATGTGCTTCGAGCTATACGTAGAAATGGCACAAGGAAGACTAGGGTGCCCGAGAGACTACCTCCCATGATGCTCCAGAAGCCTGCTGAACC 656 0.439 MDEQLLDAVCDCLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFXXXXXXXXXXXXXXXXXTWALDPRSSSNLPISTRTVQTLSEVEAFALKAEDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLREEENRLQDALAKEGGSSPSLGATIYASRFAANVLRAIRRNGTRKTRVPERLPPMMLQKPAEP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96285g00001 219 CDD CAP_ED 1 128 IPR000595 -
Trme96285g00001 219 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 218 - -
Trme96285g00001 219 Coils Coil 149 169 - -
Trme96285g00001 219 MobiDBLite consensus disorder prediction 199 219 - -
Trme96285g00001 219 SUPERFAMILY cAMP-binding domain-like 1 115 IPR018490 -
Trme96285g00001 219 Gene3D Jelly Rolls 1 115 IPR014710 -
Trme96285g00001 219 ProSiteProfiles cAMP/cGMP binding motif profile. 1 81 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96285g00001 Trme-Chr96285 50 705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96285g00001 1 219 Ion Channels AT5G53130 80.543 2.11e-112 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96285g00001 K05391 - qsa:O6P43_019902 361.688