Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96284g00001 ATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTTTATGGATGTGTAGGAGCCATATCCTCTTTACAGCAACAAGTTGATGTTCTTCGATCTCAATTAGCACAAGCACAAGCAGAAGTTGTGCACATGAAAATGCACCAATTCTCATCACCAAATCAGCACCAACCATCATATTTTCCTACTCCTACAGCCTCCAATTCATCACCACCTTCAGAAAATGTGTACCAATCAAGCCGGCTCGTTTCTTCACACATCAACATTGACCAATCCTTATGGTCATACTAG 288 0.4167 MVYEANARVRDPVYGCVGAISSLQQQVDVLRSQLAQAQAEVVHMKMHQFSSPNQHQPSYFPTPTASNSSPPSENVYQSSRLVSSHINIDQSLWSY 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96284g00001 95 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 66 - -
Trme96284g00001 95 Coils Coil 20 40 - -
Trme96284g00001 95 MobiDBLite consensus disorder prediction 48 76 - -
Trme96284g00001 95 Pfam Lateral organ boundaries (LOB) domain 1 38 IPR004883 -
Trme96284g00001 95 ProSiteProfiles LOB domain profile. 1 41 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96284g00001 Trme-Chr96284 129 416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96284g00001 1 78 AS2 family AT1G16530 49.367 4.95e-18 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme96284g00001 LOB 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96284g00001 - - gmx:100803188 119.398